Repositories list

• plasma-cell-detection

  Public
  Deep learning code for plasma cell (CD-138) quantification

  HTML

  •0•0•0•0•Updated Jun 3, 2023Jun 3, 2023

• multiple-sclerosis-imc-analysis

  Public
  Analysis for V. Ramaglia et al. "Multiplexed imaging of immune cells in staged multiple sclerosis lesions by mass cytometry", 2019

  Jupyter Notebook

  •2•2•0•9•Updated Aug 23, 2022Aug 23, 2022

• imc-converter

  Public
  Conversion utility/package for imaging mass cytometry (IMC) data

  Python

  •

  MIT License

  •2•3•1•0•Updated Apr 9, 2020Apr 9, 2020

• Vessel-Distance-Analysis

  Public
  Contains all images, MATLAB scripts, Python programs, and Definiens solutions used in "Quantitative Visualization of Hypoxia and Proliferation Gradients Within Histological Tissue Sections

  MATLAB

  •0•1•0•0•Updated Jul 1, 2019Jul 1, 2019

• qupath-extension-gdal

  Public
  A QuPath GDAL image server extension for reading JPEG2000 whole slide images

  Java

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Jun 4, 2019Jun 4, 2019

• msiimport

  Public
  Mass Spec Image format Importer for python

  pythonmass-spectrometrymedical-image-processing

  Python

  •

  MIT License

  •0•0•1•0•Updated May 17, 2019May 17, 2019