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STTARR

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  1. imc-converter imc-converter Public

    Conversion utility/package for imaging mass cytometry (IMC) data

    Python 3 2

  2. multiple-sclerosis-imc-analysis multiple-sclerosis-imc-analysis Public

    Analysis for V. Ramaglia et al. "Multiplexed imaging of immune cells in staged multiple sclerosis lesions by mass cytometry", 2019

    Jupyter Notebook 2 2

  3. Vessel-Distance-Analysis Vessel-Distance-Analysis Public

    Contains all images, MATLAB scripts, Python programs, and Definiens solutions used in "Quantitative Visualization of Hypoxia and Proliferation Gradients Within Histological Tissue Sections

    MATLAB 1

  4. qupath-extension-gdal qupath-extension-gdal Public

    A QuPath GDAL image server extension for reading JPEG2000 whole slide images

    Java 1

  5. msiimport msiimport Public

    Mass Spec Image format Importer for python

    Python

  6. plasma-cell-detection plasma-cell-detection Public

    Deep learning code for plasma cell (CD-138) quantification

    HTML

Repositories

Showing 6 of 6 repositories
  • plasma-cell-detection Public

    Deep learning code for plasma cell (CD-138) quantification

    STTARR/plasma-cell-detection’s past year of commit activity
    HTML 0 0 0 0 Updated Jun 3, 2023
  • multiple-sclerosis-imc-analysis Public

    Analysis for V. Ramaglia et al. "Multiplexed imaging of immune cells in staged multiple sclerosis lesions by mass cytometry", 2019

    STTARR/multiple-sclerosis-imc-analysis’s past year of commit activity
    Jupyter Notebook 2 2 0 9 Updated Aug 23, 2022
  • imc-converter Public

    Conversion utility/package for imaging mass cytometry (IMC) data

    STTARR/imc-converter’s past year of commit activity
    Python 3 MIT 2 1 0 Updated Apr 9, 2020
  • Vessel-Distance-Analysis Public

    Contains all images, MATLAB scripts, Python programs, and Definiens solutions used in "Quantitative Visualization of Hypoxia and Proliferation Gradients Within Histological Tissue Sections

    STTARR/Vessel-Distance-Analysis’s past year of commit activity
    MATLAB 1 0 0 0 Updated Jul 1, 2019
  • qupath-extension-gdal Public

    A QuPath GDAL image server extension for reading JPEG2000 whole slide images

    STTARR/qupath-extension-gdal’s past year of commit activity
    Java 0 GPL-3.0 1 0 0 Updated Jun 4, 2019
  • msiimport Public

    Mass Spec Image format Importer for python

    STTARR/msiimport’s past year of commit activity
    Python 0 MIT 0 1 0 Updated May 17, 2019

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