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    13 repositories

    • Dynamics_TNBC_clinical_trial

      Public
      BioRxiv https://doi.org/10.1101/2023.01.10.523259
      R
      •0•0•0•0•Updated Nov 6, 2024Nov 6, 2024

    • clone-dynamics

      Public
      0•0•0•0•Updated Oct 22, 2024Oct 22, 2024

    • scRNAseq_pipeline

      Public
      Pipeline for processing scRNA-seq (10X) and Visium data
      R
      •0•0•0•0•Updated May 21, 2024May 21, 2024

    • neoadjuvant-therapy-response-predictor

      Public
      R
      •28•50•0•0•Updated Nov 28, 2022Nov 28, 2022

    • MET-breast-landscapes

      Public
      R
      •
      Apache License 2.0
      •4•2•0•0•Updated Apr 19, 2022Apr 19, 2022

    • METABRIC_methylation_profiles

      Public
      Contains data files used in "DNA methylation landscapes of 1538 breast cancers reveal a replication-linked clock, epigenomic instability and cis-regulation" (Batra, Lifshitz et al. 2021).
      0•0•0•0•Updated Jul 18, 2021Jul 18, 2021

    • BCMC

      Public
      R
      •1•0•0•0•Updated Jan 17, 2021Jan 17, 2021

    • HCI011_RNAseq

      Public
      RNA-seq processed data and analysis code for the paper: FOXM1 is a biomarker of resistance to PI3Kα inhibition in ER+ breast cancer that is detectable using metabolic imaging (Ros et al 2020).
      R
      •2•0•0•0•Updated May 24, 2020May 24, 2020

    • brcarepred

      Public
      R
      •8•4•0•0•Updated May 7, 2019May 7, 2019

    • NGTAS_pipeline

      Public
      Computational pipeline to analyse Next Generation Targeted Amplicon Sequence data
      Shell
      •
      GNU General Public License v3.0
      •5•7•0•0•Updated Nov 30, 2018Nov 30, 2018

    • ICRG

      Public
      Example code to generate the In-silico Combined human-mouse Reference Genome (ICRG) to distinguish human and mouse reads in high-throughput sequencing experiments
      3•2•1•0•Updated Dec 12, 2017Dec 12, 2017

    • mutationalProfiles

      Public
      R
      •8•5•1•0•Updated Jan 12, 2017Jan 12, 2017

    • Patterns-Immune-Infiltration

      Public
      Contains data and annotation used in "Patterns of Immune Infiltration in Breast Cancer and Their Clinical Implications: A Gene-Expression-Based Retrospective Study" (Ali HR et al. PLoS Med 2016)
      0•3•0•0•Updated Dec 12, 2016Dec 12, 2016