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    • A collection of scripts that checks the masks generated by aligning images to the Allen Brain Atlas
      Python
      GNU General Public License v3.0
      0010Updated Oct 30, 2024Oct 30, 2024
    • osm

      Public
      OpenSciMetrics (OSM) applies NLP and LLM-based metrics and indicators related to transparency, data sharing, rigor, and open science on biomedical publications.
      Python
      Creative Commons Zero v1.0 Universal
      2191Updated Oct 29, 2024Oct 29, 2024
    • dsst-rtd

      Public
      DSST's readthedocs site repo.
      0000Updated Oct 28, 2024Oct 28, 2024
    • Code that is shared during lunch and learn sessions
      0000Updated Oct 23, 2024Oct 23, 2024
    • 0000Updated Oct 15, 2024Oct 15, 2024
    • importing leo's code to get around LFS restriction on forks
      Jupyter Notebook
      0000Updated Oct 14, 2024Oct 14, 2024
    • TeX
      0100Updated Sep 25, 2024Sep 25, 2024
    • Redirect for the NIMH IRP Data Science and Sharing Team
      HTML
      1000Updated Sep 19, 2024Sep 19, 2024
    • Python
      20160Updated Sep 16, 2024Sep 16, 2024
    • Defacing algorithm to improve and evaluate accuracy for large datasets.
      Python
      22132Updated Sep 11, 2024Sep 11, 2024
    • For uploading BIDS data to the NDA.
      Python
      BSD 3-Clause "New" or "Revised" License
      1020Updated Aug 15, 2024Aug 15, 2024
    • Extract, Transform, and load data associated with the rtransparent publication into a MongoDB database
      Dockerfile
      0000Updated Jul 28, 2024Jul 28, 2024
    • Scripts and data files used to convert anatomical MRI dicom data of the Autism Subtypes study to BIDS format, and to upload the dataset to NIMH Data Archive
      Python
      0000Updated Jun 12, 2024Jun 12, 2024
    • A small set of scripts to BIDS-validate and compare validator version outputs for OpenNeuro datasets.
      Python
      Creative Commons Zero v1.0 Universal
      0000Updated May 14, 2024May 14, 2024
    • Jupyter Notebook
      1000Updated May 8, 2024May 8, 2024
    • Collection of publicly available cognitive task datasets
      JavaScript
      MIT License
      1602Updated Apr 17, 2024Apr 17, 2024
    • Analysis code and meta-data for manuscript on irritability, ADHD symptoms, and inhibitory control in ABCD Study
      R
      Creative Commons Zero v1.0 Universal
      2000Updated Mar 17, 2024Mar 17, 2024
    • Scripts used to curate and analyze the DTI-Phenotyping dataset.
      R
      Creative Commons Zero v1.0 Universal
      1000Updated Mar 16, 2024Mar 16, 2024
    • Open Data Scientist Job Ad
      2000Updated Jan 25, 2024Jan 25, 2024
    • Holds a nice PDF version of HCP and PNC tables used in this OHBM 2024 abstract's analysis.
      TeX
      Creative Commons Zero v1.0 Universal
      0000Updated Dec 1, 2023Dec 1, 2023
    • Jupyter Notebook
      MIT License
      1000Updated Nov 29, 2023Nov 29, 2023
    • Python
      0000Updated Nov 22, 2023Nov 22, 2023
    • Shell
      2280Updated Nov 22, 2023Nov 22, 2023
    • ndx-photostim

      Public archive
      holographic photostimulation extension to NWB standard
      Python
      BSD 3-Clause "New" or "Revised" License
      1200Updated Nov 22, 2023Nov 22, 2023
    • Jupyter Notebook
      0000Updated Aug 28, 2023Aug 28, 2023
    • Preparatory scripts for BIDS tabular phenotypic data in large neuroimaging datasets.
      Python
      Creative Commons Zero v1.0 Universal
      27130Updated Aug 1, 2023Aug 1, 2023
    • ctdb2bids

      Public
      An automated tool to go from a CTDB form legend and data download to BIDS phenotype TSV and JSON files.
      Python
      MIT License
      0030Updated May 17, 2023May 17, 2023
    • A web app for searching metadata of neuroimaging studies and NIMH IRP studies.
      Python
      Creative Commons Zero v1.0 Universal
      0000Updated Apr 28, 2023Apr 28, 2023
    • A quick and dirty test ground for GitHub Actions/Workflows, the GitHub Packages service, and publishing a basic Neurodocker image.
      Dockerfile
      Creative Commons Zero v1.0 Universal
      0000Updated Apr 26, 2023Apr 26, 2023
    • A heavily modified version of PETPrep to process rates of cerebral protein synthesis (rCPS) data from four NIMH studies.
      MATLAB
      1000Updated Apr 3, 2023Apr 3, 2023