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Song 559 change base schema #573

Merged
merged 42 commits into from
Jan 7, 2020
Merged

Song 559 change base schema #573

merged 42 commits into from
Jan 7, 2020

Commits on Dec 17, 2019

  1. formatted

    @rtisma
    rtisma committed Dec 17, 2019
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  2. Merge branch 'develop' into song-559-change-base-schema

    @rtisma
    rtisma committed Dec 17, 2019
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  3. updated studyId on the code side

    @rtisma
    rtisma committed Dec 17, 2019
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  4. change study to studyId in server

    @rtisma
    rtisma committed Dec 17, 2019
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  5. fixed studyId outside of server

    @rtisma
    rtisma committed Dec 17, 2019
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  6. update presentation of info field to not_empty

    @rtisma
    rtisma committed Dec 17, 2019
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  7. renamed the sample field in the java analysis model to samples

    @rtisma
    rtisma committed Dec 17, 2019
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  8. renamed sample to samples in json fixtures

    @rtisma
    rtisma committed Dec 17, 2019
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Commits on Dec 18, 2019

  1. fixed failing tests for sample->samples rename

    @rtisma
    rtisma committed Dec 18, 2019
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  2. renamed file to files for java models

    @rtisma
    rtisma committed Dec 18, 2019
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  3. renamed field file->files in json test fixtures

    @rtisma
    rtisma committed Dec 18, 2019
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  4. passing tests for file->files rename

    @rtisma
    rtisma committed Dec 18, 2019
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  5. changed /upload endpoint to /submit

    @rtisma
    rtisma committed Dec 18, 2019
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  6. added data_type to java code

    @rtisma
    rtisma committed Dec 18, 2019
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  7. Merge pull request #570 from overture-stack/file-study-submit-sample-… 

    …rename

File study submit sample rename
    @rtisma
    rtisma authored Dec 18, 2019
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  8. updated test fixtures with dataType

    @rtisma
    rtisma committed Dec 18, 2019
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  9. test passing for dataType change

    @rtisma
    rtisma committed Dec 18, 2019
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  10. Merge branch 'song-559-change-base-schema' into type-changes

    @rtisma
    rtisma committed Dec 18, 2019
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  11. renamed donorSubmitterId to submitterDonorId in code

    @rtisma
    rtisma committed Dec 18, 2019
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  12. changed specimenSubmitterId to submitterSpecimenId

    @rtisma
    rtisma committed Dec 18, 2019
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  13. changed sampleSubmitterId to sampleSpecimenId

    @rtisma
    rtisma committed Dec 18, 2019
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Commits on Dec 19, 2019

  1. deleted unused code and deprecated VariantCall and SequencingCall leg… 

    …acy classes
    @rtisma
    rtisma committed Dec 19, 2019
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Commits on Dec 20, 2019

  1. cleaned up old comments and unused code. Added migrations for tumour … 

    …designations and code fix
    @rtisma
    rtisma committed Dec 20, 2019
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  2. added tumourNormalDesignation and specimenTissueSource

    @rtisma
    rtisma committed Dec 20, 2019
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Commits on Dec 22, 2019

  1. added fix script

    @rtisma
    rtisma committed Dec 22, 2019
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Commits on Jan 2, 2020

  1. updated

    @rtisma
    rtisma committed Jan 2, 2020
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  2. fixed

    @rtisma
    rtisma committed Jan 2, 2020
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  3. updated

    @rtisma
    rtisma committed Jan 2, 2020
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  4. updated

    @rtisma
    rtisma committed Jan 2, 2020
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  5. added ordering

    @rtisma
    rtisma committed Jan 2, 2020
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  6. updated json test fixtures

    @rtisma
    rtisma committed Jan 2, 2020
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  7. all tests passing

    @rtisma
    rtisma committed Jan 2, 2020
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Commits on Jan 3, 2020

  1. fixed tumourNormalDesignation and added matched normal and did migration

    @rtisma
    rtisma committed Jan 3, 2020
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  2. updated all json fixtures

    @rtisma
    rtisma committed Jan 3, 2020
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  3. updated

    @rtisma
    rtisma committed Jan 3, 2020
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Commits on Jan 6, 2020

  1. fixed failing tests

    @rtisma
    rtisma committed Jan 6, 2020
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  2. updated code rename from donorGender to gender

    @rtisma
    rtisma committed Jan 6, 2020
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  3. test passing and ready to merge into main feature branch

    @rtisma
    rtisma committed Jan 6, 2020
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  4. Merge branch 'develop' into song-559-change-base-schema

    @rtisma
    rtisma committed Jan 6, 2020
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  5. removed helper python script

    @rtisma
    rtisma committed Jan 6, 2020
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  6. typo: forgot to remove specimenClass and undeprecate speciemnType for… 

    … core model
    @rtisma
    rtisma committed Jan 6, 2020
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  7. merged all migrations created in this branch into 1 file

    @rtisma
    rtisma committed Jan 6, 2020
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