docs: update pkgdown config #375
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # Some of this workflow was borrowed from https://github.com/stan-dev/cmdstanr/blob/master/.github/workflows | |
| # under the BSD 3-Clause License: https://github.com/stan-dev/cmdstanr/blob/master/LICENSE.md. | |
| # | |
| # BSD 3-Clause License | |
| # Copyright (c) 2019, Stan Developers and their Assignees | |
| # All rights reserved. | |
| # | |
| # Redistribution and use in source and binary forms, with or without modification, | |
| # are permitted provided that the following conditions are met: | |
| # | |
| # 1. Redistributions of source code must retain the above copyright notice, | |
| # this list of conditions and the following disclaimer. | |
| # | |
| # 2. Redistributions in binary form must reproduce the above copyright notice, | |
| # this list of conditions and the following disclaimer in the documentation | |
| # and/or other materials provided with the distribution. | |
| # | |
| # 3. Neither the name of the copyright holder nor the names of its contributors | |
| # may be used to endorse or promote products derived from this software without | |
| # specific prior written permission. | |
| # | |
| # THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" | |
| # AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, | |
| # THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR | |
| # PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS | |
| # BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, | |
| # OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT | |
| # OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR | |
| # BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, | |
| # WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE | |
| # OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, | |
| # EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. | |
| on: [push, pull_request] | |
| name: cover | |
| jobs: | |
| cover: | |
| name: "Linux" | |
| if: "! contains(github.event.head_commit.message, '[ci skip]')" | |
| runs-on: ubuntu-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| NOT_CRAN: true | |
| steps: | |
| - name: cmdstan env vars | |
| run: | | |
| echo "CMDSTAN_PATH=${HOME}/.cmdstan" >> $GITHUB_ENV | |
| shell: bash | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-r@v2 | |
| - uses: r-lib/actions/setup-pandoc@v1 | |
| - name: Install system dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libglpk-dev libglpk40 libcurl4-openssl-dev openmpi-bin openmpi-common libopenmpi-dev || true | |
| - name: Repos | |
| run: | | |
| cat("\noptions(repos=c(ropensci='https://ropensci.r-universe.dev',CRAN ='https://cloud.r-project.org'))\n", file = "~/.Rprofile", append = TRUE) | |
| shell: Rscript {0} | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::covr | |
| needs: check | |
| - name: Install cmdstan | |
| run: | | |
| cmdstanr::check_cmdstan_toolchain(fix = TRUE) | |
| cmdstanr::install_cmdstan(cores = 2) | |
| shell: Rscript {0} | |
| - name: Test coverage | |
| run: covr::codecov(type = "tests", quiet = FALSE) | |
| shell: Rscript {0} |