Removed minimsom from toml and adapted readme

saeyslab · Sep 5, 2023 · d84e5ac · d84e5ac
1 parent 447d625
commit d84e5ac
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/README.md b/README.md
@@ -50,7 +50,7 @@ ff = fs.main.read_FCS("./tests/data/ff.fcs")
 fsom = fs.main.FlowSOM(ff, cols_to_use=[8, 11, 13, 14, 15, 16, 17], xdim=10, ydim=10, n_clus=10)
 
 # Plot the FlowSOM results
-p = fs.pl.plot_stars(fsom, background_values=fsom.get_cluster_data().obs.metaclustering
+p = fs.pl.plot_stars(fsom, background_values=fsom.get_cluster_data().obs.metaclustering)
 p.show()
 ```
 

diff --git a/pyproject.toml b/pyproject.toml
@@ -21,7 +21,7 @@ urls.Source = "https://github.com/artuurC/FlowSOM"
 urls.Home-page = "https://github.com/artuurC/FlowSOM"
 dependencies = [
     "mudata", "numpy", "matplotlib", "pandas", "scipy", "pytometry",
-    "minisom", "scikit-learn", "python-igraph", "pytest",
+    "scikit-learn", "python-igraph", "pytest",
     "session-info", "pathlib", "numba"
 ]