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Feat: on-disk RevIndex based on RocksDB #2230

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merged 30 commits into from
Dec 1, 2023
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31e01f0
rkyv support in signature
luizirber Jul 9, 2022
f094761
reorg select
luizirber Sep 16, 2023
b77a452
make storage and manifest private in collection
luizirber Sep 17, 2023
4fd2f46
bring back update
luizirber Sep 17, 2023
6e69b7f
cleanup template, replace with selection
luizirber Sep 17, 2023
95bcd2e
Placate linters on HashFunctions
luizirber Sep 17, 2023
9bb513c
Initial support for custom hash function
luizirber Sep 17, 2023
7afebda
collection: build from_sigs and from_paths in parallel if possible
luizirber Sep 18, 2023
0799adc
save collection on update...
luizirber Sep 20, 2023
feaafb1
clean up check
luizirber Sep 27, 2023
81c5bce
Merge remote-tracking branch 'origin/latest' into lirber/mastiff
luizirber Sep 29, 2023
5e9e3d4
derive clone for selection
luizirber Sep 30, 2023
3a13ab2
Build manifest from paths in parallel
luizirber Sep 30, 2023
8464094
Deps: chrono version pin (#2798)
bluegenes Oct 9, 2023
2a0a619
save version in DB
luizirber Oct 9, 2023
1fab8f8
Merge remote-tracking branch 'refs/remotes/origin/lirber/mastiff' int…
luizirber Oct 9, 2023
d5222fe
Merge remote-tracking branch 'origin/latest' into lirber/mastiff
luizirber Oct 9, 2023
a4949b0
Merge remote-tracking branch 'origin/latest' into lirber/mastiff
luizirber Oct 18, 2023
ba59fa5
Merge remote-tracking branch 'origin/latest' into lirber/mastiff
luizirber Oct 30, 2023
3f20d30
Merge remote-tracking branch 'origin/latest' into lirber/mastiff
luizirber Nov 1, 2023
8ad10f1
Merge remote-tracking branch 'origin/latest' into lirber/mastiff
luizirber Nov 11, 2023
ae56e39
Merge remote-tracking branch 'origin/latest' into lirber/mastiff
luizirber Nov 16, 2023
f07bc34
Use byteorder 1.4.3 for pyo3_branchwater compat
luizirber Nov 22, 2023
cfe2834
No dep on bytecount
luizirber Nov 22, 2023
be6b038
Add a test for innerstorage save_sig
luizirber Nov 22, 2023
fe525f3
Merge remote-tracking branch 'origin/latest' into lirber/mastiff
luizirber Nov 23, 2023
d4ddd8a
more storage tests
luizirber Nov 23, 2023
e8e2c51
Merge remote-tracking branch 'origin/latest' into lirber/mastiff
luizirber Nov 25, 2023
8e2eb51
Update rust changelog
luizirber Nov 26, 2023
a748bb3
Merge branch 'latest' into lirber/mastiff
ctb Dec 1, 2023
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2 changes: 1 addition & 1 deletion .github/workflows/dev_envs.yml
Original file line number Diff line number Diff line change
Expand Up @@ -57,7 +57,7 @@ jobs:

- name: install dependencies
shell: bash -l {0}
run: mamba install 'tox>=3.27,<4' tox-conda rust git compilers pandoc
run: mamba install 'tox>=3.27,<4' tox-conda rust git compilers pandoc libstdcxx-ng

- name: run tests for 3.10
shell: bash -l {0}
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6 changes: 6 additions & 0 deletions .github/workflows/rust.yml
Original file line number Diff line number Diff line change
Expand Up @@ -229,6 +229,12 @@ jobs:
toolchain: stable
override: true

- name: Check semver
uses: obi1kenobi/cargo-semver-checks-action@v2
with:
crate-name: sourmash
version-tag-prefix: r

- name: Make sure we can publish the sourmash crate
uses: actions-rs/cargo@v1
with:
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4 changes: 4 additions & 0 deletions .readthedocs.yml
Original file line number Diff line number Diff line change
Expand Up @@ -9,6 +9,10 @@ build:
tools:
python: "3.10"
rust: "1.64"
apt_packages:
- llvm-dev
- libclang-dev
- clang

# Build documentation in the docs/ directory with Sphinx
sphinx:
Expand Down
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