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Merge dev/dev_varRBErobOpt into varRBErobOpt/Update
commit 3215c95 Merge: ccc73dc 5263869 Author: Niklas Wahl <[email protected]> Date: Wed Sep 6 11:28:32 2023 +0200 Merge branch 'dev' into dev_varRBErobOpt commit ccc73dc Merge: e915ed6 bdc7567 Author: Niklas Wahl <[email protected]> Date: Wed Sep 6 11:22:34 2023 +0200 Merge pull request e0404#652 from amitantony/dev_varRBErobOpt_GUI class based GUI capabilities for the var RBE plans commit bdc7567 Author: amitantony <[email protected]> Date: Mon Sep 4 17:02:31 2023 +0200 bugfix for mistaken function call in plotslicewrapper commit 50b0805 Author: amitantony <[email protected]> Date: Fri Sep 1 11:42:25 2023 +0200 Robustness functionality commit 5263869 Author: Niklas Wahl <[email protected]> Date: Thu Aug 31 14:36:15 2023 +0200 fix capital letter in MatRad_Config in CT dicom import commit 0e76650 Author: Niklas Wahl <[email protected]> Date: Thu Aug 31 14:35:45 2023 +0200 fix missing env switch in dicom import commit 0040374 Merge: fe7fe40 51734ac Author: Niklas Wahl <[email protected]> Date: Thu Aug 31 11:46:51 2023 +0200 Merge branch 'dev_classGUI' of https://github.com/e0404/matRad into pr/652 # Conflicts: # dicom/matRad_importDicomRTPlan.m # dicom/matRad_scanDicomImportFolder.m # gui/widgets/matRad_OptimizationWidget.m # gui/widgets/matRad_PlanWidget.m # matRad.m commit a5a8e62 Merge: 2ff9f09 51734ac Author: Niklas Wahl <[email protected]> Date: Thu Aug 31 11:02:32 2023 +0200 Merge pull request e0404#646 from e0404/dev_classGUI class GUI for dev commit fe7fe40 Author: Amit Bennan <[email protected]> Date: Thu Aug 31 10:56:35 2023 +0200 clean up code commit 629f91d Author: amitantony <[email protected]> Date: Tue Aug 29 16:53:38 2023 +0200 Using Scenario based optimization for the gui commit 51734ac Merge: 33f3a1d 38a43ce Author: Amit Bennan <[email protected]> Date: Fri Aug 4 13:04:06 2023 +0200 Merge branch 'dev_classGUI' of https://github.com/e0404/matRad into dev_classGUI commit 33f3a1d Author: Amit Bennan <[email protected]> Date: Fri Aug 4 13:03:07 2023 +0200 Bug fix for Viewing widget and Viewer option updates on changes to pln or workflow options commit 38a43ce Author: Niklas Wahl <[email protected]> Date: Thu Aug 3 15:22:28 2023 -0700 some more cleanup and default positioning of widgets commit 27b01e8 Author: Niklas Wahl <[email protected]> Date: Thu Aug 3 14:59:34 2023 -0700 fix for obtaining environment information commit 68b8c3a Author: Niklas Wahl <[email protected]> Date: Thu Aug 3 14:37:06 2023 -0700 some cleanup commit 43e086e Author: Niklas Wahl <[email protected]> Date: Thu Aug 3 14:13:19 2023 -0700 deprecate java warning commit 37c0ff8 Author: Amit Bennan <[email protected]> Date: Thu Aug 3 18:57:09 2023 +0200 1. matRad.m to original example setting, 2. MainGUI Documentation, 3. missing documentation commit 6e03ecf Merge: 0991137 92bc88d Author: Amit Bennan <[email protected]> Date: Wed Aug 2 22:41:37 2023 +0200 Merge branch 'dev_classGUI' of https://github.com/e0404/matRad into dev_classGUI commit 0991137 Author: Amit Bennan <[email protected]> Date: Wed Aug 2 22:41:03 2023 +0200 'isOctave' checks replaced with 'matRad_Config object.isOctave' commit 92bc88d Author: amitantony <[email protected]> Date: Tue Aug 1 15:20:45 2023 +0200 Documentation and TODO update commit bfaf5f1 Author: amitantony <[email protected]> Date: Fri Jul 28 17:11:48 2023 +0200 Comments and documentation corrections commit aaec9ba Merge: 41e2a65 5385ba4 Author: Niklas Wahl <[email protected]> Date: Tue Jul 25 16:10:29 2023 +0200 Merge pull request e0404#653 from amitantony/dev_classGUI_feature Feature to autofill the couch angles commit cf4fe0b Author: amitantony <[email protected]> Date: Tue Jul 25 09:01:03 2023 +0200 Default Values for BioParam commit 5385ba4 Author: amitantony <[email protected]> Date: Tue Jul 25 08:44:39 2023 +0200 Feature to autofill the couch angles to gantry angle size if single value of couch angle is entered commit 78cd622 Author: amitantony <[email protected]> Date: Mon Jul 24 18:29:50 2023 +0200 carbon pop up bug commit 9c7a91d Author: amitantony <[email protected]> Date: Mon Jul 24 18:26:51 2023 +0200 pop up bug for bio model commit 5b35787 Author: amitantony <[email protected]> Date: Mon Jul 24 17:53:51 2023 +0200 Merge mistake Rectified commit 322ca69 Merge: 522569c 41e2a65 Author: amitantony <[email protected]> Date: Mon Jul 24 17:37:43 2023 +0200 Merge branch 'dev_classGUI' of https://github.com/e0404/matRad into dev_varRBErobOpt_GUI commit 522569c Merge: f3ea5c8 e915ed6 Author: amitantony <[email protected]> Date: Mon Jul 24 13:19:42 2023 +0200 Merge branch 'dev_varRBErobOpt' of https://github.com/e0404/matRad into dev_varRBErobOpt_GUI commit f3ea5c8 Merge: 87832ed ca479fe Author: amitantony <[email protected]> Date: Mon Jul 24 13:18:41 2023 +0200 Merge branch 'dev_classGUI' of https://github.com/e0404/matRad into dev_varRBErobOpt_GUI Runs Basic Var RBE plans in GUI commit e915ed6 Merge: ce9179d 9cc05a8 Author: Niklas Wahl <[email protected]> Date: Fri Jul 21 16:59:52 2023 +0200 Merge pull request e0404#650 from piastammer/dev_varRBErobOpt minor bug fix and small documentation changes commit ce9179d Merge: 32bff43 6ef2c24 Author: Niklas Wahl <[email protected]> Date: Fri Jul 21 16:57:40 2023 +0200 Merge pull request e0404#649 from remocristoforetti/dev_varRBErobOpt_bugFix minor bug fix commit 9cc05a8 Author: Pia Stammer <[email protected]> Date: Fri Jul 21 16:53:47 2023 +0200 added warning and TODO for single bixel example commit 6ef2c24 Author: remocristoforetti <[email protected]> Date: Fri Jul 21 16:44:19 2023 +0200 minor change in generic photon machine machine.meta.name turned into machine.meta.machine commit 41e2a65 Author: Amit Bennan <[email protected]> Date: Fri Jul 21 16:42:27 2023 +0200 bugfix for error on loading first case commit ad9f5f9 Author: remocristoforetti <[email protected]> Date: Fri Jul 21 16:34:06 2023 +0200 error printout message fix in matRad_multScen commit 32bff43 Merge: 87832ed a6f7004 Author: Niklas Wahl <[email protected]> Date: Fri Jul 21 15:09:43 2023 +0200 Merge pull request e0404#624 from tobiasbecher/dev_Pareto Small changes to where penalties are applied commit ca479fe Author: Amit Bennan <[email protected]> Date: Fri Jul 21 14:45:33 2023 +0200 set tissue warning commit 42a4edc Author: Pia Stammer <[email protected]> Date: Fri Jul 21 14:44:01 2023 +0200 added TODOs to check commented lines commit da50e91 Author: Amit Bennan <[email protected]> Date: Fri Jul 21 14:30:33 2023 +0200 test if pln.propSeq exists ( bug from example 1 with GUI) commit 59e3e43 Author: Pia Stammer <[email protected]> Date: Fri Jul 21 14:22:15 2023 +0200 removed redundant copyright statements & added Todos for documenation commit e400ee9 Author: Pia Stammer <[email protected]> Date: Fri Jul 21 13:56:22 2023 +0200 Set default BAMStoIsoDist for topas machine file commit f497b16 Author: Amit Bennan <[email protected]> Date: Fri Jul 21 11:56:40 2023 +0200 bugfix: 1. fixed reinitialization parameter changes, 2. fixed faulty overwrite of VOIPlotFlag that caused skipping contours commit 87832ed Merge: acd73e7 2958dc4 Author: Niklas Wahl <[email protected]> Date: Thu Jul 20 11:07:55 2023 +0200 Merge pull request e0404#610 from tobiasbecher/dev_varRBErobOptPhantomBuilder Phantom builder added commit 2958dc4 Merge: 03ec1a0 acd73e7 Author: Niklas Wahl <[email protected]> Date: Thu Jul 20 10:01:53 2023 +0200 Merge branch 'dev_varRBErobOpt' into pr/610 # Conflicts: # .gitignore commit 03ec1a0 Author: Niklas Wahl <[email protected]> Date: Thu Jul 20 10:00:26 2023 +0200 reorganization of builder files commit acd73e7 Merge: c9acdc5 a83b691 Author: Niklas Wahl <[email protected]> Date: Wed Jul 19 17:15:39 2023 +0200 Merge branch 'dev_varRBErobOpt' of https://github.com/e0404/matRad into dev_varRBErobOpt commit c9acdc5 Author: Niklas Wahl <[email protected]> Date: Wed Jul 19 17:15:33 2023 +0200 Update of base data file for estimate of energy spectrum commit 2f00898 Author: Tobias Becher <[email protected]> Date: Mon Jul 10 12:47:38 2023 +0200 Final updates Final changes to the phantom builder commit a83b691 Merge: d5bf94a f2e62b6 Author: Niklas Wahl <[email protected]> Date: Mon Jul 10 10:13:15 2023 +0200 Merge pull request e0404#642 from JenHardt/dev_varRBErobOpt IsoCenterShift BugFix commit f2e62b6 Author: JenHardt <[email protected]> Date: Fri Jul 7 13:56:16 2023 +0200 IsoCenterShift BugFix commit bca2260 Author: Tobias Becher <[email protected]> Date: Fri Jun 30 14:41:50 2023 +0200 Update matRad_runTests.m commit d474f09 Author: Tobias Becher <[email protected]> Date: Fri Jun 30 14:33:25 2023 +0200 Removed indexing of VOI VOI are no longer assigned an index on initialization. -> No need to clear all at the start of a script if rerunning commit c12f5e8 Author: Tobias Becher <[email protected]> Date: Fri Jun 30 14:10:55 2023 +0200 Fixed geometry issues Fixed issues with the coordinate system commit a6f7004 Author: Tobias Becher <[email protected]> Date: Fri Jun 30 10:24:52 2023 +0200 Slack parameter changes - Changed epsilon variable name to slackParameter - Now parameter of constraint - Removed objective funtion to turn into constraint commit c91799c Merge: 94e701c 4177468 Author: amitantony <[email protected]> Date: Fri Jun 30 10:03:04 2023 +0200 Merge branch 'dev_classGUI' of https://github.com/e0404/matRad into dev_classGUI commit dedf147 Author: Tobias Becher <[email protected]> Date: Wed Jun 28 13:37:18 2023 +0200 Some changes Some changes made for pull request. Commit also tests if server tests now run through. commit d5bf94a Author: Niklas Wahl <[email protected]> Date: Wed Jun 28 10:18:28 2023 +0200 allows to compute the bixel dose when cutoff was not precomputed by setting the compensation factor to 1 commit 83fc8a6 Author: Niklas Wahl <[email protected]> Date: Wed Jun 28 10:17:45 2023 +0200 emittance base data format now allows one emittance per focus commit 5fda67e Merge: 99eaa34 bffb834 Author: Niklas Wahl <[email protected]> Date: Wed Jun 21 10:56:08 2023 +0200 Merge pull request e0404#637 from remocristoforetti/dev_varRBErobOpt_bugFix_MCemittanceBaseData bugFix in MCemittanceBaseData for negative distances commit bffb834 Author: RemoCristoforetti <[email protected]> Date: Wed Jun 21 10:49:28 2023 +0200 bugFix negative distance for spot size correction in air. commit 99eaa34 Author: Niklas Wahl <[email protected]> Date: Wed Jun 21 10:10:19 2023 +0200 Fix matRad_MCemittanceBaseData.m Replaced Inf with realmax so interpolation does not error commit 3e7952a Author: Niklas Wahl <[email protected]> Date: Wed Jun 7 13:19:31 2023 +0200 AppendResultGUI now creates consistent fieldnames commit c5dd9eb Author: Niklas Wahl <[email protected]> Date: Tue Jun 6 18:32:40 2023 +0200 appendresultgui now either overwrites or always appends the identifier commit 1bab14d Author: Niklas Wahl <[email protected]> Date: Tue Jun 6 18:32:21 2023 +0200 fix for the spot size air MCS correction commit 6a746ee Author: Niklas Wahl <[email protected]> Date: Tue Jun 6 14:13:20 2023 +0200 fix variable names in example 12 commit a7e72fa Author: Niklas Wahl <[email protected]> Date: Tue Jun 6 14:13:01 2023 +0200 add empirical correction for MCS in air when approximating beam model commit 1a80ea9 Author: Tobias Becher <[email protected]> Date: Mon Jun 5 11:01:52 2023 +0200 Name change for constraints Changed the name for created constraints in the optimization commit 94e701c Author: amitantony <[email protected]> Date: Fri Jun 2 15:25:13 2023 +0200 1. avoid sequencing warning everytime we optimize particles, 2. IGNORED as a tissue type, 3. fix for "ignoring legend entries" warning , 4. DVHStat naming bugfix commit 4177468 Merge: 2273867 893f9b3 Author: Niklas Wahl <[email protected]> Date: Thu Jun 1 14:02:31 2023 +0200 Merge pull request e0404#631 from amitantony/bug/DVHWidgetFix Bug/dvh widget fix commit f59722c Merge: 893f9b3 2273867 Author: amitantony <[email protected]> Date: Thu Jun 1 12:38:18 2023 +0200 Merge branch 'dev_classGUI' of https://github.com/e0404/matRad into dev_classGUI commit 893f9b3 Author: amitantony <[email protected]> Date: Wed May 31 15:58:13 2023 +0200 Consistant naming fix commit ae58086 Author: amitantony <[email protected]> Date: Wed May 31 15:45:17 2023 +0200 more compact application of recenter commit 2273867 Merge: 37c2f02 602bae6 Author: Amit Bennan <[email protected]> Date: Wed May 31 15:36:47 2023 +0200 Merge pull request e0404#626 from amitantony/dev_classGUI_matPatientLoadBug Dev class GUI .mat patient load bug commit 8c2d20e Author: amitantony <[email protected]> Date: Wed May 31 15:34:18 2023 +0200 feature: Recentering to iso center button commit 602bae6 Author: amitantony <[email protected]> Date: Tue May 30 18:01:48 2023 +0200 fix for test failing in matRad.m commit 48ca910 Author: Niklas Wahl <[email protected]> Date: Tue May 30 16:35:22 2023 +0200 revert explicit start of parpool in testing pipeline commit 871e0b6 Merge: 153ba54 a531a2d Author: Niklas Wahl <[email protected]> Date: Tue May 30 16:27:48 2023 +0200 Merge branch 'dev_varRBErobOpt' of https://github.com/e0404/matRad into dev_varRBErobOpt commit 153ba54 Author: Niklas Wahl <[email protected]> Date: Tue May 30 16:25:33 2023 +0200 explicit start of parallel pool in testing workflow commit 7561424 Merge: ec8fd78 37c2f02 Author: amitantony <[email protected]> Date: Tue May 30 15:07:11 2023 +0200 Merge branch 'dev_classGUI' of https://github.com/e0404/matRad into dev_classGUI_matPatientLoadBug commit a531a2d Author: Niklas Wahl <[email protected]> Date: Tue May 30 13:51:31 2023 +0200 Fix wrong test folder in tests.yml commit d2da6e4 Merge: 8f03510 d6ea09a Author: Niklas Wahl <[email protected]> Date: Tue May 30 13:42:19 2023 +0200 Merge branch 'master' of https://github.com/e0404/matRad into dev_varRBErobOpt # Conflicts: # .github/workflows/tests.yml # MatRad_Config.m # matRad_fluenceOptimization.m # matRad_rc.m # ompMC/matRad_compileOmpMCInterface.m # optimization/optimizer/compile_ipopt_minGW_octave640.sh commit d6ea09a Merge: 689eabe beaee4e Author: Niklas Wahl <[email protected]> Date: Tue May 30 13:27:32 2023 +0200 Merge pull request e0404#628 from e0404/hotfix/fixTestEnvironment Hotfix to the test pipeline on the master branch commit beaee4e Merge: 2f42625 689eabe Author: Niklas Wahl <[email protected]> Date: Fri May 26 19:14:53 2023 +0200 Merge branch 'master' into hotfix/fixTestEnvironment commit 37c2f02 Merge: 5984075 72d5d3c Author: Niklas Wahl <[email protected]> Date: Fri May 26 18:58:18 2023 +0200 Merge pull request e0404#625 from amitantony/dev_classGUI_a_DicomImportBug Dev class GUI a dicom import bug commit 72d5d3c Merge: ef55778 5984075 Author: Niklas Wahl <[email protected]> Date: Fri May 26 18:57:28 2023 +0200 Merge branch 'dev_classGUI' into dev_classGUI_a_DicomImportBug commit 5984075 Merge: 671baea 1f7bc74 Author: Niklas Wahl <[email protected]> Date: Fri May 26 18:55:48 2023 +0200 Merge pull request e0404#627 from amitantony/dev_classGUI_IsoDoseBugFix BUGFIX: Iso dose contour not updated with changing selectedDisplayOption commit 2f42625 Author: Niklas Wahl <[email protected]> Date: Fri May 26 18:44:48 2023 +0200 Update job name for octave commit 0fe09aa Author: Niklas Wahl <[email protected]> Date: Fri May 26 18:35:04 2023 +0200 Update job name commit 2397e3f Author: Niklas Wahl <[email protected]> Date: Fri May 26 18:23:04 2023 +0200 Add latest supported release options for tests to cover for release changes commit ef55778 Author: amitantony <[email protected]> Date: Fri May 26 16:15:48 2023 +0200 Class GUI dicom import bugs resolve to return atleast 1 DICOM patient case commit fa26d01 Author: Tobias Becher <[email protected]> Date: Fri May 26 16:15:06 2023 +0200 Small changes to where penalties are applied Moved the penalties from the objectives to the objective function. Also added an option for objective constraint. commit ec8fd78 Author: Amit Bennan <[email protected]> Date: Fri May 26 14:30:12 2023 +0200 bug fix on first load of patient case commit 689eabe Merge: f7bded9 46d5f2c Author: Amit Bennan <[email protected]> Date: Fri May 26 11:35:38 2023 +0200 Merge pull request e0404#608 from e0404/bug/606-matrad_plotvoicontourslice-tries-to-access-ct-as-cell-bug fix passes ct struct instead of ct.cubeHU to matRad_plotVoiContourSlice commit 2bca404 Author: Tobias Becher <[email protected]> Date: Fri May 26 11:27:42 2023 +0200 Compatibility with test script Added phantomBuilder example to test script and rounding added in BOX phantom assignment commit 1f7bc74 Author: amitantony <[email protected]> Date: Fri May 26 11:09:50 2023 +0200 Bugfix for : Iso dose contour not updated with changing selectedDisplayOption commit 8f03510 Merge: 58362ac 82742b0 Author: Niklas Wahl <[email protected]> Date: Tue May 23 18:25:09 2023 +0200 Merge pull request e0404#621 from tobiasbecher/dev_varRBErobOptGradient Bugfix for RBExD gradient calculation. commit 82742b0 Author: Tobias Becher <[email protected]> Date: Tue May 16 10:27:55 2023 +0200 Update .gitignore commit 19799c8 Author: Tobias Becher <[email protected]> Date: Tue May 16 10:24:27 2023 +0200 Fixed gradient Bug commit 58362ac Author: Niklas Wahl <[email protected]> Date: Wed May 10 12:08:26 2023 +0200 correct for reading x and y spot sizes from emittance data in topas interface commit 380b740 Author: Tobias Becher <[email protected]> Date: Fri Apr 28 16:19:12 2023 +0200 Update matRad_runTests.m Removing new example1 for now from unit tests commit 497e036 Author: Tobias Becher <[email protected]> Date: Fri Apr 28 15:56:33 2023 +0200 Final changes Renamed matRad_VOIVolume to matRad_PhantomVOIVolume and changed example files. commit 46d5f2c Merge: 539dc94 f7bded9 Author: Niklas Wahl <[email protected]> Date: Fri Apr 28 15:35:17 2023 +0200 Merge branch 'master' into bug/606-matrad_plotvoicontourslice-tries-to-access-ct-as-cell-bug commit f7bded9 Merge: 03cc52f 7456efc Author: Niklas Wahl <[email protected]> Date: Fri Apr 28 15:34:40 2023 +0200 Merge pull request e0404#607 from e0404/bug/605-bug-warning-and-error-messages-in-matrad_readnrrd-fail-string-concatenation-is-wrong-when-linecontent-is-an-empty-cell Error message rectified commit 539dc94 Merge: 711dc58 03cc52f Author: Amit Bennan <[email protected]> Date: Fri Apr 28 15:23:39 2023 +0200 Merge branch 'master' into bug/606-matrad_plotvoicontourslice-tries-to-access-ct-as-cell-bug commit 7456efc Merge: 8fb0fb8 03cc52f Author: Niklas Wahl <[email protected]> Date: Fri Apr 28 15:01:26 2023 +0200 Merge branch 'master' into bug/605-bug-warning-and-error-messages-in-matrad_readnrrd-fail-string-concatenation-is-wrong-when-linecontent-is-an-empty-cell commit 03cc52f Merge: b2ce690 bb41c69 Author: Niklas Wahl <[email protected]> Date: Fri Apr 28 14:59:51 2023 +0200 Merge pull request e0404#617 from SakuMyl/master Check installation of image processing toolbox in DICOM import commit bb41c69 Author: Saku Myllymäki <[email protected]> Date: Fri Apr 28 14:23:24 2023 +0300 check installation of image processing toolbox commit 8fb0fb8 Author: Amit Bennan <[email protected]> Date: Thu Apr 20 15:21:47 2023 +0200 displays parsed line in warning message commit 711dc58 Merge: bcbc8b7 b2ce690 Author: Amit Bennan <[email protected]> Date: Tue Apr 11 11:41:53 2023 +0200 Merge branch 'master' into bug/606-matrad_plotvoicontourslice-tries-to-access-ct-as-cell-bug commit 85f7cda Author: Niklas Wahl <[email protected]> Date: Thu Apr 6 17:06:51 2023 +0200 fix problem with constant property containing filepath commit d6238cd Author: Niklas Wahl <[email protected]> Date: Wed Apr 5 14:59:25 2023 +0200 Update tests.yml Update apt before octave install commit eab8fc2 Merge: 375987a b2ce690 Author: Niklas Wahl <[email protected]> Date: Wed Apr 5 14:46:18 2023 +0200 Merge branch 'master' into bug/605-bug-warning-and-error-messages-in-matrad_readnrrd-fail-string-concatenation-is-wrong-when-linecontent-is-an-empty-cell commit b10d896 Author: Tobias Becher <[email protected]> Date: Tue Apr 4 11:46:17 2023 +0200 Changed number of example file commit 48786f3 Author: Tobias Becher <[email protected]> Date: Tue Apr 4 11:35:05 2023 +0200 Updates to the phantom - Moved ct creation to phantom builder - ct and cst are now private and can be received by calling getctst - Added documentaion to phantom builder functions - Modified example file to incorporate changes commit cf1e27b Author: Tobias Becher <[email protected]> Date: Tue Apr 4 11:32:06 2023 +0200 Updates to VOI related classes Renamed Cubic and Spherical VOI classes Added option to set HU for VOI commit ba69a3b Merge: 4d394f6 b85ec2c Author: Niklas Wahl <[email protected]> Date: Mon Apr 3 11:45:22 2023 +0200 Merge branch 'dev_varRBErobOpt' into dev_varRBErobOptPhantomBuilder commit 4d394f6 Author: Tobias Becher <[email protected]> Date: Mon Apr 3 10:49:36 2023 +0200 Delete matRad_createPhantomnew.m commit 51deb77 Author: Tobias Becher <[email protected]> Date: Mon Apr 3 10:47:03 2023 +0200 Added phantom builder Added folder for phantom builder and an example commit ab666aa Author: Tobias Becher <[email protected]> Date: Mon Apr 3 10:30:24 2023 +0200 Update .gitignore commit 0a03aee Author: Niklas Wahl <[email protected]> Date: Mon Feb 6 02:17:51 2023 +0100 fix path (cherry picked from commit ec57365) commit fe61134 Author: Niklas Wahl <[email protected]> Date: Mon Feb 6 02:11:54 2023 +0100 use preinstallex xvfb in linux test (cherry picked from commit cee9df6) commit 5a8c7f9 Author: Niklas Wahl <[email protected]> Date: Sat Feb 4 15:48:06 2023 +0100 Revert "adjust xvfb call in testing" This reverts commit 075402c. (cherry picked from commit 78c7b3d) commit 99336e0 Author: Niklas Wahl <[email protected]> Date: Sat Feb 4 15:43:05 2023 +0100 adjust xvfb call in testing (cherry picked from commit 075402c) commit d4acb02 Author: Niklas Wahl <[email protected]> Date: Sat Feb 4 15:10:49 2023 +0100 update scripts for github folder (cherry picked from commit ec4e8b2) commit 4b9a2fa Author: Niklas Wahl <[email protected]> Date: Sat Feb 4 15:06:49 2023 +0100 move scripts used during testing to github folder (cherry picked from commit 735976d) commit c3a673f Author: Niklas Wahl <[email protected]> Date: Fri Feb 3 18:47:36 2023 +0100 update workflow actions (cherry picked from commit bf5f4b9) commit 7060a3a Author: Niklas Wahl <[email protected]> Date: Fri Feb 3 16:27:44 2023 +0100 include rehash of file directory after linking the optimizer and added availability check (cherry picked from commit c509e82) commit ef95ac3 Author: Niklas Wahl <[email protected]> Date: Fri Feb 3 01:15:32 2023 +0100 option to disable function plot in optimization (cherry picked from commit 46445b2) commit 2c9b118 Author: Niklas Wahl <[email protected]> Date: Fri Feb 3 01:15:14 2023 +0100 update compiled linux optimizer (cherry picked from commit ffced04) commit 8e17c34 Author: Niklas Wahl <[email protected]> Date: Wed Feb 1 16:28:33 2023 +0100 update compiled optimizers with static linking (cherry picked from commit 73d6097) commit f0b7199 Author: Niklas Wahl <[email protected]> Date: Wed Feb 1 16:09:03 2023 +0100 updated optimizer compilation scripts (cherry picked from commit 5eff06f) commit c274d6d Author: Niklas Wahl <[email protected]> Date: Wed Feb 1 14:39:05 2023 +0100 Recompiled Octave 6.4.0 mex files for windows and linux, updated scripts and submodules (cherry picked from commit b353948) commit 4f436df Author: Niklas Wahl <[email protected]> Date: Mon Jan 30 18:00:41 2023 +0100 ompMC interface and MCsquare interface - fix eval function for obtaining preconfigured compiler flags (cherry picked from commit 7d788f7) commit add110e Author: Niklas Wahl <[email protected]> Date: Sun Jan 29 20:07:06 2023 +0100 Update tests.yml Switch to Ubuntu 22.04 and thus Octave 6 in test workflow (cherry picked from commit bdb95e9) commit b2ce690 Merge: cb6b04a 091f78b Author: Niklas Wahl <[email protected]> Date: Thu Mar 23 13:07:04 2023 +0100 Merge pull request e0404#602 from e0404/bug/601-bug-using-minmaxmeandose-constraint-on-structure-with-only-1-voxel-failes Fix error when constraints are applied to volumes which have 0 or 1 voxel. commit bcbc8b7 Author: Amit Bennan <[email protected]> Date: Thu Mar 23 12:00:26 2023 +0100 fix passes ct struct instead of ct.cubeHU to matRad_plotVoiContourSlice commit 375987a Author: Amit Bennan <[email protected]> Date: Thu Mar 23 11:33:56 2023 +0100 Error message rectified and all error and warning messages use matRad config messages commit c0c8353 Author: Niklas Wahl <[email protected]> Date: Tue Mar 7 01:50:55 2023 +0100 remove phsp-header commit 091f78b Author: Niklas Wahl <[email protected]> Date: Mon Feb 27 12:13:17 2023 +0100 fixes wrong detection of constraint bounds and jacobian structure when respective volume has 0 or only 1 voxel. commit 2ff9f09 Merge: 27ad9ff aab03e9 Author: Niklas Wahl <[email protected]> Date: Fri Feb 24 15:16:09 2023 +0100 Merge pull request e0404#599 from JenHardt/dev BUG: ssd calculation should use actual ray distance instead of SAD commit aab03e9 Merge: 9f4af93 27ad9ff Author: Hardt <[email protected]> Date: Tue Feb 7 15:47:12 2023 +0100 Merge branch 'dev' of https://github.com/JenHardt/matRad into dev commit 9f4af93 Author: Hardt <[email protected]> Date: Tue Feb 7 15:46:27 2023 +0100 small Bugfix commit 5084863 Author: Amit Bennan <[email protected]> Date: Fri Jan 27 10:32:23 2023 +0100 Code style comments addressed (MB review) commit b85ec2c Author: Niklas Wahl <[email protected]> Date: Wed Jan 25 23:04:36 2023 +0100 Downwards compatibility of biological model commit 5663803 Author: Niklas Wahl <[email protected]> Date: Wed Jan 25 18:11:35 2023 +0100 fix missing extractBetween function in Octave commit 64ce14c Merge: d3625aa 4e87571 Author: Niklas Wahl <[email protected]> Date: Tue Jan 24 15:55:11 2023 +0100 Merge pull request e0404#536 from HomolkaN/dev_varRBErobOpt_Update Extensive TOPAS workflow update: commit 260bd66 Merge: a1c8743 ecc6e0c Author: Amit Bennan <[email protected]> Date: Fri Jan 20 14:03:37 2023 +0100 Merge branch 'dev_classGUI_a' of https://github.com/amitantony/matRad into dev_classGUI commit d3625aa Author: Niklas Wahl <[email protected]> Date: Thu Jan 19 13:41:47 2023 +0100 Remove opengl software rendering query due to deprecation commit 3e427cf Author: Niklas Wahl <[email protected]> Date: Thu Jan 19 01:44:05 2023 +0100 Avoid erroring on opengl in matRadGUI commit ecc6e0c Merge: 8c9f8ee 671baea Author: Amit Bennan <[email protected]> Date: Wed Jan 4 13:03:51 2023 +0100 Merge branch 'dev_classGUI' into dev_classGUI_a commit 894211d Author: Niklas Wahl <[email protected]> Date: Wed Dec 21 18:34:02 2022 +0100 improve dicom import handling for RTPlan and RTDose commit 671baea Merge: 91cbc12 27ad9ff Author: Amit Bennan <[email protected]> Date: Tue Dec 20 13:31:01 2022 +0100 Merge branch 'dev' of https://github.com/e0404/matRad into dev_classGUI for Merge experiment commit 27ad9ff Merge: 3b781b6 cb6b04a Author: Niklas Wahl <[email protected]> Date: Tue Nov 29 20:29:38 2022 +0100 Merge branch 'master' into dev commit 8c9f8ee Author: amitantony <[email protected]> Date: Thu Nov 10 14:51:40 2022 +0100 documentation commit c711bdc Author: amitantony <[email protected]> Date: Fri Nov 4 19:19:26 2022 +0100 first working prototype commit 3fe5660 Author: amitantony <[email protected]> Date: Thu Oct 27 11:39:54 2022 +0200 Gamma Widget skeleton commit a1c8743 Author: Amit Bennan <[email protected]> Date: Thu Oct 27 11:38:59 2022 +0200 DVHStatswidget object stored in main gui commit 2d41f12 Author: Amit Bennan <[email protected]> Date: Mon Oct 24 13:36:12 2022 +0200 1. Documentation for newer widget functions 2. clean up of code 3. fully update DVH solution commit 3b781b6 Author: Niklas Wahl <[email protected]> Date: Thu Oct 20 00:01:08 2022 +0200 Update matRad_calcCubes.m Correct MU vector calculation commit 6db771e Merge: fea82a8 1b13404 Author: Niklas Wahl <[email protected]> Date: Wed Oct 5 17:04:51 2022 +0200 Merge branch 'master' into dev commit b80323c Merge: e4ad063 d8c58e0 Author: Amit Bennan <[email protected]> Date: Fri Jul 29 16:06:11 2022 +0200 Merge branch 'dev_classGUI_a' of https://github.com/amitantony/matRad into dev_classGUI_a commit e4ad063 Merge: a216bd1 c0a9f08 Author: Amit Bennan <[email protected]> Date: Fri Jul 29 16:05:59 2022 +0200 Merge branch 'dev_clean' into dev_classGUI_a : runs basic examples commit d8c58e0 Author: amitantony <[email protected]> Date: Fri Jul 29 14:26:47 2022 +0200 [bugfix] errors while running the basic matrad script commit a216bd1 Author: Amit Bennan <[email protected]> Date: Fri Jul 29 10:17:00 2022 +0200 [bug fix] DVH updates with the selected cube for display commit 657ef2b Merge: 13d35e0 d17ecb2 Author: amitLT <[email protected]> Date: Thu Jun 9 14:09:42 2022 +0200 Merge branch 'dev_classGUI_a' of https://github.com/amitantony/matRad into dev_classGUI_a commit d17ecb2 Author: amitantony <[email protected]> Date: Fri Apr 29 17:40:54 2022 +0200 Input Parser for DVH and statistics widget commit eae4a47 Author: amitantony <[email protected]> Date: Wed Apr 27 11:59:30 2022 +0200 bug fix : iso line update problem for "Saved Results" of ResultGUI in viewing widget commit 13d35e0 Author: amitLT <[email protected]> Date: Fri Apr 22 17:07:26 2022 +0200 encoding to UTF8 commit baa9182 Author: amitLT <[email protected]> Date: Thu Apr 21 13:02:15 2022 +0200 bug fix : enabling and disabling sequencing options commit 7204af4 Author: amitLT <[email protected]> Date: Mon Apr 4 18:05:02 2022 +0200 Added sequencing drop down menu to the GUI commit 16beca5 Author: amitLT <[email protected]> Date: Tue Mar 29 14:23:18 2022 +0200 update of new referencing to sequencing in matRad and example scripts commit 5f4da57 Author: amitLT <[email protected]> Date: Tue Mar 29 14:06:10 2022 +0200 Sequencing wrapper function that accepts highlevel matRad structures commit cb5a94c Author: amitLT <[email protected]> Date: Thu Mar 24 09:43:13 2022 +0100 Fixes for couch angle update, (cst,ct ) loaded message, CBTplanning commit 91cbc12 Author: Niklas Wahl <[email protected]> Date: Fri Dec 10 16:15:17 2021 +0100 some fixes in the class-based GUI commit b3cd841 Merge: 5137fcc f725b01 Author: Niklas Wahl <[email protected]> Date: Mon Feb 8 15:01:31 2021 +0100 Merge branch 'dev_classGUI' of https://github.com/e0404/matRad into dev_classGUI commit f725b01 Merge: 6b50cf5 51f8428 Author: Niklas Wahl <[email protected]> Date: Mon Feb 8 14:34:26 2021 +0100 Merge pull request e0404#486 from palkma/dev_classGUI added tooltips to GUI elements commit 51f8428 Author: Palkowitsch <[email protected]> Date: Tue Feb 2 16:19:11 2021 +0100 added tooltips commit 5137fcc Merge: 1996919 d930c3e Author: Niklas Wahl <[email protected]> Date: Thu Dec 24 13:39:51 2020 +0100 Merge remote-tracking branch 'origin/master' into dev_classGUI # Conflicts: # MatRad_Config.m # dicom/@matRad_DicomExporter/matRad_DicomExporter.m # dicom/matRad_scanDicomImportFolder.m # matRadGUI.m # matRad_showDVH.m # plotting/matRad_plotIsoDoseLines.m commit 1996919 Merge: 6b50cf5 4399711 Author: Niklas Wahl <[email protected]> Date: Mon Oct 5 11:17:34 2020 +0200 Merge branch 'dev_classGUI' of https://github.com/nellyabbani/matRad into dev_classGUI commit 4399711 Author: nelly.abbani <[email protected]> Date: Fri Aug 28 10:40:18 2020 +0200 uiwrapper function commit 6b50cf5 Author: Niklas Wahl <[email protected]> Date: Fri Aug 21 17:02:38 2020 +0200 fix tests commit 434422d Merge: b4c7783 1463811 Author: Niklas Wahl <[email protected]> Date: Fri Aug 21 16:26:46 2020 +0200 Merge branch 'dev' of https://github.com/e0404/matRad into dev_classGUI commit b4c7783 Author: Niklas Wahl <[email protected]> Date: Fri Aug 21 16:26:10 2020 +0200 changes to gui calls commit 38c7131 Author: Niklas Wahl <[email protected]> Date: Fri Aug 21 15:46:46 2020 +0200 more old files removal commit b5d48cf Author: Niklas Wahl <[email protected]> Date: Fri Aug 21 15:44:51 2020 +0200 removal of old logo files commit 736b2f2 Author: Niklas Wahl <[email protected]> Date: Fri Aug 21 15:43:39 2020 +0200 gui fixes and removal of old files commit a3ba0c2 Author: Niklas Wahl <[email protected]> Date: Thu Aug 20 18:38:18 2020 +0200 More consistency and compatability updates commit dfd8e9a Author: Niklas Wahl <[email protected]> Date: Wed Aug 19 18:43:47 2020 +0200 modifications to Widget structure and layout, consistent colors, etc commit adac165 Author: Niklas Wahl <[email protected]> Date: Wed Aug 19 10:26:50 2020 +0200 tweaks to the gui widgets, new EventData-based class to explicitly state changed workspace variables commit 6e19dfa Author: Niklas Wahl <[email protected]> Date: Wed Aug 19 10:25:09 2020 +0200 crop logo a little commit 15e4cd8 Author: Niklas Wahl <[email protected]> Date: Wed Aug 19 10:24:37 2020 +0200 remove some old gui functions commit 9bf703f Author: Niklas Wahl <[email protected]> Date: Fri Aug 7 12:12:58 2020 +0200 Move matRadGUI to main folder again commit f271346 Author: Niklas Wahl <[email protected]> Date: Fri Aug 7 12:12:21 2020 +0200 fix createLayout for dicom import commit 52e8fe2 Author: Niklas Wahl <[email protected]> Date: Thu Jul 30 14:21:50 2020 +0200 Fix paths and maximize matRadGUI commit d0885c4 Merge: 36a149d ca4044b Author: Niklas Wahl <[email protected]> Date: Thu Jul 30 11:59:33 2020 +0200 Merge branch 'dev_classGUI' of https://github.com/nellyabbani/matRad into dev_classGUI # Conflicts: # gui/matRadGUI.m commit ca4044b Author: nellyabbani <[email protected]> Date: Wed Jul 29 20:33:14 2020 +0200 Split DVH widget into 2 widgets. Add exportDicom widget. +other small fixes commit 36a149d Author: Niklas Wahl <[email protected]> Date: Wed Jul 29 17:44:10 2020 +0200 changes to avoid crash in Octave commit 5694ffd Author: nellyabbani <[email protected]> Date: Tue Jun 30 10:31:45 2020 +0200 Further improvements to the GUI widgets commit 4f69fa4 Author: nellyabbani <[email protected]> Date: Mon Jun 15 13:11:40 2020 +0200 Small fixes on the GUI widgets commit fe2abdc Author: nellyabbani <[email protected]> Date: Fri Jun 12 17:15:08 2020 +0200 Merge dev_classGUI with master class commit a89edfe Merge: 5620dbe c22da7d Author: nellyabbani <[email protected]> Date: Fri Jun 12 15:59:35 2020 +0200 Merge branch 'master' into dev_classGUI # Conflicts: # dicom/@matRad_importDicomWidget/createLayout.m # dicom/@matRad_importDicomWidget/matRad_importDicomWidget.m # dicom/DKFZ_Logo.png # dicom/gui/matRad_importDicomGUI_LayoutFcn.m # dicom/gui/matRad_importDicomGUI_gui_mainFcn.m # dicom/matRad_checkEnvDicomRequirements.m # dicom/matRad_createCst.m # dicom/matRad_importDicomGUI.fig.bak # dicom/matrad_logo.png # dicomImport/DKFZ_Logo.png # dicomImport/matrad_logo.png # gfx/DKFZ_Logo.png # gfx/matrad_logo.png # matRadGUI.m # matRad_fluenceOptimization.m # matRad_showQualityIndicators.m commit 5620dbe Author: nellyabbani <[email protected]> Date: Fri Jun 12 13:54:32 2020 +0200 Update to refresh the GUI widgets when clicked + implementation of notify and listeners concepts in octave commit 71e397e Author: nellyabbani <[email protected]> Date: Mon Jun 8 09:27:35 2020 +0200 Functioning version of all the GUI widgets commit 4abd14e Author: nellyabbani <[email protected]> Date: Fri May 1 13:06:35 2020 +0200 Scripted GUI widgets commit 3501e99 Author: nellyabbani <[email protected]> Date: Thu Apr 2 18:03:56 2020 +0200 Scripted GUI workflow, plan, and optimization widgets commit 986dbb6 Merge: 4045a4b 833e582 Author: nellyabbani <[email protected]> Date: Tue Mar 3 16:18:17 2020 +0100 Merge remote-tracking branch 'origin/dev_classGUI' into dev_classGUI # Conflicts: # gui/matRad_PlanWidget.m # gui/matRad_WorkflowWidget.m commit 4045a4b Author: nellyabbani <[email protected]> Date: Tue Mar 3 16:13:38 2020 +0100 Initial fix to the widgets commit 833e582 Author: Nabe Al Hasnawi <[email protected]> Date: Fri Feb 28 13:43:55 2020 +0100 Widget Default Values and Names commit 0db80e1 Author: Nabe Al Hasnawi <[email protected]> Date: Tue Feb 25 12:07:10 2020 +0100 matRad gui icons as mat file commit 922c349 Author: Nabe Al Hasnawi <[email protected]> Date: Tue Feb 25 12:04:09 2020 +0100 First developments on independent GUI widgets commit b926ed9 Author: Nabe <[email protected]> Date: Tue Dec 10 11:27:12 2019 +0100 Class based Widgets for import & export with shared import/export GUI commit f55a46a Merge: 6df1b0f d66cf32 Author: Niklas Wahl <[email protected]> Date: Fri Aug 16 16:13:11 2019 +0200 Merge branch 'dev' of https://github.com/wahln/matRad into dev_newScriptedGUI commit 6df1b0f Author: Niklas Wahl <[email protected]> Date: Fri Aug 16 16:12:22 2019 +0200 Exported the IO gui's and added the dicom external GUI files commit b07c70c Author: Niklas Wahl <[email protected]> Date: Tue Aug 13 12:42:03 2019 +0200 fix for missing mat File containing GUI parmeters (is exported from guide). commit 1ae350a Merge: 7ee4580 81e4545 Author: Niklas Wahl <[email protected]> Date: Fri Aug 9 20:13:02 2019 +0200 Merge branch 'dev' of https://github.com/e0404/matRad into dev_newScriptedGUI commit 7ee4580 Merge: ecbcbc1 81332ae Author: Niklas Wahl <[email protected]> Date: Fri Aug 9 20:09:15 2019 +0200 Merge branch 'dev_newScriptedGUI' of https://github.com/wahln/matRad into dev_newScriptedGUI # Conflicts: # matRadGUI_export.m # tools/matRad_fixExportedGUI.m commit 81332ae Author: Niklas Wahl <[email protected]> Date: Fri Aug 9 19:00:03 2019 +0200 new figure files and backup commit e8da6d6 Author: Niklas Wahl <[email protected]> Date: Fri Aug 9 18:56:34 2019 +0200 fix for the dicom import commit 78fd927 Author: Niklas Wahl <[email protected]> Date: Fri Aug 9 18:38:16 2019 +0200 changes to the GUI so that exported main and layout fcn are used commit fa937ee Author: Niklas Wahl <[email protected]> Date: Fri Aug 9 14:04:03 2019 +0200 improves matRadGUI compability and fixes display of the new obejctive table commit df2ca61 Author: Niklas Wahl <[email protected]> Date: Thu Aug 8 12:10:56 2019 +0200 octave compatible dicom import commit ecbcbc1 Author: Niklas Wahl <[email protected]> Date: Wed Jun 12 23:28:26 2019 +0200 fides to the exported GUI commit 65a91ca Author: Niklas Wahl <[email protected]> Date: Tue Jun 4 12:50:54 2019 +0200 script to remove unnecessary options for graphics options commit 2d7b739 Author: Niklas Wahl <[email protected]> Date: Fri May 24 21:08:39 2019 +0200 initial export with line fix
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