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[DRAFT] Prep for merge 2023-05-12 [VS-860] #8319

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@mcovarr mcovarr commented May 12, 2023

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gatk-bot commented May 12, 2023

Github actions tests reported job failures from actions build 4963291517
Failures in the following jobs:

Test Type JDK Job ID Logs
cloud 17.0.6+10 4963291517.10 logs
unit 17.0.6+10 4963291517.12 logs
unit 17.0.6+10 4963291517.1 logs

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Github actions tests reported job failures from actions build 4969063940
Failures in the following jobs:

Test Type JDK Job ID Logs
cloud 17.0.6+10 4969063940.10 logs

mcovarr and others added 3 commits May 17, 2023 17:13
* add Aarons changes

* put terra token in python

* id not bucket

* hardcode for testing

* do we need a new docker image?

* set workspace info

* pull in name from rawls

* pass output locations

* add back prepare

* add GvsImportGenomes back

* update python for grabbing cols

* split methods for easier testing

* set defaults, but allow optional overrides for sample table and id

* add unit test for python column guessing

* clean up python for testing

* add proper docker

* is this where the loop is coming from?

* better names

* remove testing artifact

* add back problem lines to the test

* throw out columns with values other than strings

* set defaults in the right place
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gatk-bot commented May 17, 2023

Github actions tests reported job failures from actions build 5007888899
Failures in the following jobs:

Test Type JDK Job ID Logs
cloud 17.0.6+10 5007888899.10 logs
unit 17.0.6+10 5007888899.12 logs
unit 17.0.6+10 5007888899.1 logs

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Github actions tests reported job failures from actions build 5008020203
Failures in the following jobs:

Test Type JDK Job ID Logs
cloud 17.0.6+10 5008020203.10 logs

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gatk-bot commented Jun 7, 2023

Github actions tests reported job failures from actions build 5203661234
Failures in the following jobs:

Test Type JDK Job ID Logs
cloud 17.0.6+10 5203661234.10 logs

@mcovarr mcovarr closed this Aug 11, 2023
@mcovarr mcovarr deleted the vs_860_2023-05-12 branch August 11, 2023 16:38
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4 participants