Releases: deepmodeling/abacus-develop
Releases · deepmodeling/abacus-develop
v3.2.5
Feature:
- add the output of E_KS(sigma->0) by @Chentao168 in #2571
- Add get_value and inner_most_ptr method for container by @denghuilu in #2620
Refactor
- use rho/kin_r rather than Charge in Gint_inout interface by @maki49 in #2591
- move GlobalC::GridD from global_fp.h to sltk_grid_driver.h by @hongriTianqi in #2584
- new class "RadialSet" and "AtomicRadials" for module_nao by @jinzx10 in #2585
- move write_potential to ModuleIO by @hongriTianqi in #2582
- output efermi in pw basis by @YuLiu98 in #2604
- new class "BetaRadials" and "RadialCollection" for module_nao by @jinzx10 in #2610
- Add an unified function to output SCF convergence and fermi energy by @pxlxingliang in #2618
- Remove unnecessary template variables from module esolver. by @denghuilu in #2621
- remove "using namespace std" to avoid namespace pollution by @Satinelamp in #2644
Bug fix
- an error message in symmetry by @maki49 in #2594
- bug that scf executes relax_step by @Qianruipku in #2595
- RPA_LRI::cal_postSCF_exx() by @PeizeLin in #2598
- recover c++11 compatibility of module_nao by @jinzx10 in #2599
- compiling warning by both Intel and GNU compilers by @dyzheng in #2609
- optimized printing of start magnetization by @dyzheng in #2605
- set bessel_nao_rcut as rcut by @YuLiu98 in #2625
- fix error of Tensor::inner_most_ptr function by @denghuilu in #2637
Test
- UnitTest for dnrm2 by @SeptemberMy in #2590
- UnitTest for module_tddft by @lyb9812 in #2580
- add module_io/bessel_basis unit test by @kirk0830 in #2614
- add a CI test for out_mat_t and out_mat_dh by @hongriTianqi in #2613
Docs
- Update faq.md by @ouqi0711 in #2581
- update phonopy doc by @1041176461 in #2603
- update documentation of input parameters for four parts by @dyzheng in #2530
- small fix in the description of exx paras by @maki49 in #2623
- fix the installation of ase by @Chentao168 in #2624
Full Changelog: v3.2.4...v3.2.5
v3.2.4
What's Changed
Refactor
- Add scf_thr_type to choose the convergence criterion of scf calculation. by @sunliang98 in #2470
- add getter functions for elecstate energy terms by @hongriTianqi in #2480
- new class "NumericalRadial" for numerical radial functions by @jinzx10 in #2471
- remove GlobalCs: bigpw, rhopw from module_gint and GridT entirely by @maki49 in #2485
- add an interface function for LCAO_deepks by @hongriTianqi in #2517
- simplify out_dos logic in esolver_ks_lcao by @hongriTianqi in #2519
- remove GlobalC in module_hamilt_lcao by @haozhihan in #2529
- remove part of Global classes by @Qianruipku in #2537
- EXX: pack EXX-process to Exx_LRI_Interface and remove GlobalC::exx_lri by @maki49 in #2542
- rename ienvelope and istate to get_wf and get_pchg by @YuLiu98 in #2548
- more boundary condition support for cubic spline by @jinzx10 in #2540
- move cal_nelec from class Charge to UnitCell by @hongriTianqi in #2575
- add an output interface class by @hongriTianqi in #2562
Bug fix
- bug fixed for bandgap output in nupdown=1 case by @ouqi0711 in #2494
- correct the date of commit outputted in log by @pxlxingliang in #2502
- somewhere produces unnecessary warnings in complile by @maki49 in #2536
- bugs in NAO generation by @YuLiu98 in #2555
- correct the file name in examples/XXX/XXX/run.sh by @pxlxingliang in #2566
- abacus hang when nbands < ncpu by @Satinelamp in #2557
- fix readthedocs searching by @caic99 in #2499
Test
- add integrate tests for exx by @PeizeLin in #2478
- add integrate tests for exx by @PeizeLin in #2484
- Add Unit test for elecstate_energy.cpp by @hongriTianqi in #2486
- add unit test for elecstate_pw.cpp by @hongriTianqi in #2477
- add unit test for pot_base class by @hongriTianqi in #2491
- add unit test for potential_new.cpp by @hongriTianqi in #2495
- update result.ref due to the change of iweight function by @YuLiu98 in #2553
- add unit test for charge.cpp by @hongriTianqi in #2527
- UnitTest for SetMixing by @SeptemberMy in #2560
- add CI cases for kinetic energy density output by @hongriTianqi in #2572
- add an issue template for tests by @caic99 in #2579
Docs and sample jobs
- Update the parameters about Electronic Structure and OFDFT. by @sunliang98 in #2505
- update parameters in the relax module by @Liu-RX in #2507
- update parameters in SDFT and conductivities by @Qianruipku in #2510
- update the description of System variables in input-main.md by @haozhihan in #2521
- update the description of VDW parameters in input-main.md by @pxlxingliang in #2518
- change positions of unit and default in relax module of input-main.md by @Liu-RX in #2514
- modify input parameters for symmetry and Exx by @maki49 in #2503
- update parameters of deepks and implict solvation model by @hongriTianqi in #2504
- update parameters in the output module by @YuLiu98 in #2509
- update parameters in the md module by @YuLiu98 in #2516
- update the parameters about debugging by @denghuilu in #2528
- Update the parameters about DFT+U and Electric field and dipole correction by @lauthirteen in #2506
- Update the docs of TDDFT and ShengBTE, and rename E_demet by @Chentao168 in #2534
- Further update the parameters about Electronic Structure and OFDFT by @sunliang98 in #2515
- update Hybrid functional in docs/advanced/scf/construct_H.md by @PeizeLin in #2538
- update the documentation for NAO-related variables in input by @jinzx10 in #2561
- add explanation of input variable out_dm1 by @wenfei-li in #2568
- update version by @pxlxingliang in #2588
New Contributors
- @lauthirteen made their first contribution in #2506
Full Changelog: v3.2.3...v3.2.4
v3.2.3
What's Changed
Feature
- Feature: Implement Luo-Karasiev-Trickey (LKT) KEDF for OFDFT. by @sunliang98 in #2354
- Merge TDDFT_new branch by @lyb9812 in #2356
- Feature: add plain and pulay mixing for EXX by @1041176461 in #2183
- Standardized absorption plotting process by @ESROAMER in #2375
- Add judgement to tddft by @ESROAMER in #2423
- Feature: new FFT-based spherical Bessel transform method & its unit test by @jinzx10 in #2402
- Feature: enable auto match type map between STRU and DP model by @YuLiu98 in #2440
- feature: add version.h file and --version args, and print version and commit in log by @pxlxingliang in #2445
- Feature: Dm mixing by @PeizeLin in #2442
Build and compilation
- Enable CMake compilation of serial version PW by @Liu-RX in #2357
- fix: do not install git in CMakeLists.txt, instead provide message by @pxlxingliang in #2464
Refactor
- Refactor: refactor the parameter nbands_sto by @Qianruipku in #2348
- Refactor: remove part of global classes by @Qianruipku in #2376
- Refactor: Remove some global classes in module_elecstate. by @sunliang98 in #2385
- Refactor: module_md by @YuLiu98 in #2393
- Refactor: clang-format module_md by @YuLiu98 in #2401
- Refactor: Remove GlobalC::rhopw from module_elecstate by @sunliang98 in #2406
- Refactor: convert my_rank to member variable of MD_Para by @YuLiu98 in #2412
- Refactor: nscf in stochastic DFT by @Qianruipku in #2414
- Refactor: replace
MatrixOrb*
and deletesrc_ri
by @maki49 in #2369 - Refactor: remove GobalC::sf in module_io by @hongriTianqi in #2415
- Refactor: update default value of stress_thr by @YuLiu98 in #2427
- Refactor: remove GlobalC::kv in module_io by @hongriTianqi in #2408
- Refactor: remove GlobalC::sf in module_hamilt_general by @haozhihan in #2434
- Refactor: remove GlobalC::rhopw in module_hamilt_general by @haozhihan in #2438
- Refactor: add const for functions for module_pw by @Qianruipku in #2424
- Refactor: remove global rhopw, bigpw, wfcpw, CHR_MIX in module_io by @hongriTianqi in #2443
- Refactor: remove GlobalC::en by @Qianruipku in #2446
- Refactor: remove GlobalC::kv in module_hamilt_lcao by @haozhihan in #2450
- Refactor: tddft code by @lyb9812 in #2435
- Refactor: iweight function by @Qianruipku in #2463
Bug fix
- Fix: Initialize std::complex in a more formal way. by @sunliang98 in #2362
- Fix: dynamically enlarge
symmetry_prec
in cell-relax and optimize the error message by @maki49 in #2355 - Bug fix: minor bug fixed for DeePKS stress label by @ouqi0711 in #2353
- Fix: incidental errors in folding_vl_k by @dyzheng in #2374
- fix bug in operator<(const Abfs::Vector3_Order) by @PeizeLin in #2387
- fix: remove useless cout after PR #2376 by @Qianruipku in #2392
- Fix the bug of the output of DFT+U in issue 2218 by @Qx80610702 in #2403
- Fix: loose a too-strict assert in Symmetry::hermite_normal_form by @maki49 in #2411
- Fix: the bug of outputing onsite.dm introduced in PR #2403 by @Qx80610702 in #2410
- Fix: Fix en.calculate_etot called by nscf of sdft. by @sunliang98 in #2419
- Fix: leak of memories in function parse_expression by @1041176461 in #2421
- Fix: inconsistence between STRU and DP model by @YuLiu98 in #2432
- Fix: Remove the empty parameters in STRU_READIN_ADJUST.cif by @sunliang98 in #2425
- Fix: Set DerivePointerAlignment to false in clang-format by @haozhihan in #2377
- Fix: fix single precision error while in examples/scf/pw_Si2 case by @denghuilu in #2437 #2448
- Fix: fix single precision error while enable force/stress calculation by @denghuilu in #2444
- Fix mismatch of symmetry operation between real and reciprocal space in
ibz_kpoint
by @maki49 in #2441 - fix: add include in parse_args.h to fix the using of std::exit by @pxlxingliang in #2465
- Fix mismatch in
ibz_kpoints
and add symmetry info in intergrate tests by @maki49 in #2461 - fix: bug of mix_DMk_2D.set_mixing_beta() by @PeizeLin in #2466
Test
- Test: the UT of deleteVector and Index in sltk_adjacent_set.cpp by @yaohaoze in #2360
- Test: add ut for functions in soc.pp by @hongriTianqi in #2340
- Test: add unit tests for module_relax/relax_old by @YuLiu98 in #2368
- Test: add unit test for class Magnetism by @hongriTianqi in #2371
- Test: Add unit test for write_orb_info by @hongriTianqi in #2373
- Test: Add unit tests in module_base/parallel_global.cpp by @Flashbac09 in #2384
- Test: unit test for exx_mixing_beta by @1041176461 in #2388
- Test: add unit test for class Occupy by @hongriTianqi in #2396
- Test: add unit test for atom_in and cal_epsilon by @sunml99 in #2405
- Test: fix two unit tests that passed with Warnning_quit by @hongriTianqi in #2433
- Test: add UT of grid atom_arrange and atom in cell_neighbor by @yaohaoze in #2452
- test: add a return in run.sh for each case in examples by @pxlxingliang in #2454
- Test: add unit test for elecstate_print.cpp by @hongriTianqi in #2458
- Test: add unit test for class ElecState by @hongriTianqi in #2467
Docs and sample jobs
- Examples: update md examples by @YuLiu98 in #2370
- Docs: add instructions for update release by @caic99 in #2378
- set urllib3 to version 1.26.15 by @baixiaokuang in #2380
- Update docs about dav in ks_solver by @haozhihan in #2391
- Add docs and examples of ShengBTE by @Chentao168 in #2413 #2447
- Docs: Update phonopy.md by @1041176461 in #2456
New Contributors
- @Flashbac09 made their first contribution in #2384
- @Qx80610702 made their first contribution in #2403
Full Changelog: v3.2.2...v3.2.3
v3.2.2
What's Changed
Feature
- Feature: enable append output mode for Mulliken charge in md by @YuLiu98 in #2261
- Feature: Add new container implementation for ABACUS. by @denghuilu in #2304
Refactor
- Refactor: Use a unified function to output charge density and potential in real space. by @sunliang98 in - #2203
- Refactor: update md restart mode by @YuLiu98 in #2236
- Refactor: Fix the effective digits in .cube file. by @sunliang98 in #2276
- Refactor: delete GlobalC in module_relax/relax_old by @YuLiu98 in #2335
- Refactor: delete unused code in src_ri ; remove GlobalC in module_ri, src_ri by @maki49 in #2325
Bug fix
- Bug fix: minor bug fixed for deepks stress calculation by @ouqi0711 in #2260
- Fix: bug of dSpherical_Bessel_dx function by @Qianruipku in #2240
- fix memory leak problem of class Record_adj by @lcclcc233 in #2294
- Fix blas connector in LibRI, then comment zdotc out in module_base by @maki49 in #2193
- Fix the error when using DFT+U without setting ks_solver by @Satinelamp in #2319
Test
- Test: unit tests for module_symmetry (part 1) by @maki49 in #2223
- Test: add a serial UT for pw_basis_k by @hongriTianqi in #2257
- Test:UnitTest for OMP_PARALLEL and TRY_OMP_PARALLEL by @SeptemberMy in #2239
- Test: add UT for write_wfc_nao by @hongriTianqi in #2279
- Test: add a serial ut for nscf_band by @hongriTianqi in #2277
- Test: complete unit test of functions in global_file by @kirk0830 in #2327
- Test: add a ut for function in read_wfc_nao by @hongriTianqi in #2329
New Contributors
- @xuan112358 made their first contribution in #2255
- @lcclcc233 made their first contribution in #2294
Full Changelog: v3.2.1...v3.2.2
v3.2.1
What's Changed
Features and Performance
- Feature: calculate asynchronous overlap matrix for Hefei-NAMD by @lyb9812 in #2131
- Feature: enable iso NPT for md_prec_level=1 by @YuLiu98 in #2197
- Feature: OpenMP for some module in PW by @Alcanderian in #2070
- Perf: optimize rhog_symmetry by @maki49 in #2171
- Perf: Optimize RI by @PeizeLin in #2072
Build and Compilation
- Build!: using icpx in replace of icpc by @caic99 in #2186
- Build: enable icpx in Makefile build test & enable libxc in dynamic test by @Liu-RX in #2205
- Build: prompt on absence of libxc by @caic99 in #2159
Documentations
- Doc: fix input docs type error by @Shen-Zhen-Xiong in #2180
- Docs: add instructions on updating conda release by @caic99 in #2185
- Docs: Update advanced.md by @ouqi0711 in #2229
- Docs: update dos example by @hongriTianqi in #2227
- Docs: update faq by @caic99 in #2181
Bug Fix
- Fix a bug in symmetry::pricell by @maki49 in #2231
- Fix: compiler warning "Wundefined-var-template" by @caic99 in #2202
- fix: delete ilaenv_ function by @Qianruipku in #2158
- Fix: remove
std::defaultfloat
by @caic99 in #2214 - Fix: the read-in method of bool type para by @YuLiu98 in #2187
- Fix: use MAKE_DIR to make sure return value is handled by @caic99 in #2191
- Fix: vl_in_h=0 is broken by @hongriTianqi in #2220
- GenELPA upgrades to compatible with the latest version of ELPA by @pplab in #2177
Refactor
- Refactor: clean up deprecated functions in Numerical_Orbital_Lm by @jinzx10 in #2160
- Refactor: delete useless HONG and functions, update setup_cell() by @YuLiu98 in #2201
- Refactor: itiaiw2iat interface in UnitCell by @dyzheng in #2241
- Refactor: update init_after_vc() and before_scf() by @YuLiu98 in #2167
- Refactor: update md_type, md_thermostat, md_pmode by @YuLiu98 in #2206
- Refactor: Update the warning about PP in unitcell.cpp . by @sunliang98 in #2198
Testing
- Test : add integrate test for relax_new by @wenfei-li in #2153
- Test: add a two-type-atoms msst test by @YuLiu98 in #2192
- Test: add serial ut for the pw_basis class by @hongriTianqi in #2225
- Test: add UT for class ORB_table_phi & auto-deallocation in destructor by @jinzx10 in #2152
- Test: add UT for Input::Init by @hongriTianqi in #2162
- Test: add UT for write_dm by @hongriTianqi in #2154
- Test:UnitTest for BLOCK_TASK_DIST_1D by @SeptemberMy in #2196
- Test:UnitTest for TASK_DIST_1D by @SeptemberMy in #2176
- the UT of InputCove and Bolck by @yaohaoze in #2157
New Contributors
- @Shen-Zhen-Xiong made their first contribution in #2180
- @pplab made their first contribution in #2177
Full Changelog: v3.2.0...v3.2.1
v3.2.0
Features and Performance
- Feature: add macro definition __DEBUG for test-only message by @dyzheng in #2076
- Change output format related with Hefei-NAMD by @lyb9812 in #2085
- Feature: add out_app_flag to control whether output matrix in an append manner by @YuLiu98 in #2115
- Feature: enable three different precision levels for variable-cell MD by @YuLiu98 in #2123
Build and Compilation
Refactor and Code-cleanup
- Refactor: remove obsolete Gaunt-calculating method by @jinzx10 in #2047
- Clean-up: comment out the unused function in numerical_descriptor by @maki49 in #2068
- Refactor: Remove SPIN1_CHG file by @sunliang98 in #2033
- Refactor: change cond_wenlarge parameter to cond_dt and cond_dtbatch by @Qianruipku in #2089
- refactor:Solve security risks in "sto_wf.cpp" by @hzhang2001 in #2094
- Refactor: simplify calling of read_rho and write_rho by @hongriTianqi in #2110
- Refactor: rearrange code paths for module pw, ao, gint by @dyzheng in #2108
- Refactor: print detailed energy in md by @YuLiu98 in #2127
- Clean-up: correct description of nbands the input parameter by @kirk0830 in #2133
- Refactor: unify the energy format of md and scf by @YuLiu98 in #2129
- Clean-up: Correct typos in parameter description by @kirk0830 in #2136
- Clean-up: Update input_test_para.cpp by @yuhuan12 in #2146
CI and Code Coverage
- Test:UT of mkdirout by @yuhuan12 in #2050
- Test:UT of equal by @yuhuan12 in #2066
- Test: revise annotation in unitcell_test_pw.cpp by @hongriTianqi in #2057
- UT of matrix.print(std::ostream &os,const double threshold); by @KCJ2000 in #2059
- Test: reserve sparse matrix codes for future coverage by @hongriTianqi in #2069
- Test: refactor calculate_dos and write_istate_info by @hongriTianqi in #2071
- Test: add unit test for class ORB_table_alpha by @jinzx10 in #2073
- Test: add UT for write_istate_info and calculate_dos by @hongriTianqi in #2077
- Test: fix a failed ut by @hongriTianqi in #2084
- Test: add ut for the function write_dos_pw by @hongriTianqi in #2081
- Test: add UTs for DiagoCG and DiagoDavid for single precision case and fixed some bug for related code by @dyzheng in #2088
- Test: UnitTest for YlmRealTemplate(float) by @SeptemberMy in #2098
- the UT for element_basis_index by @yaohaoze in #2104
- Test: add ut for autoset_big_cell_size() by @dyzheng in #2107
- Test: add UT for read_rho by @hongriTianqi in #2091
- test: add UT for auto_set_big_size by @Qianruipku in #2109
- Test: elongate the test time limit for dynamic analysis by @Liu-RX in #2096
- Test:add UT for matrix::reshape by @KCJ2000 in #2117
- Test: add ut for Input::bcast by @hongriTianqi in #2116
- Test: add UT for Input_Conv::Convert by @hongriTianqi in #2118
- Test: add UT for print_info by @hongriTianqi in #2121
- Test:UnitTest for write_input.cpp by @SeptemberMy in #2126
- Test: add unit test for class Numerical_Nonlocal by @jinzx10 in #2134
- Test:UT of InputParaTest Bcast by @yuhuan12 in #2138
- Test: Add psi_UT for module_psi by @haozhihan in #2140
- Test : UT for relax_new by @wenfei-li in #2093
- Test: fix running of parallel ut by @hongriTianqi in #2145
Bug Fix
- Fix: append output bug for H/S(R) by @YuLiu98 in #2052
- Fix: severe bug in LCAO basis! by @Qianruipku in #2048
- Fix: no coverage found in module_io in CI by @hongriTianqi in #2064
- Fix: logics in init_rho and read_rho by @hongriTianqi in #2080
- Fix: noncollinear spin without soc in LCAO base by @dyzheng in #2046
- Fix: Repair the function of out_pot=1. by @sunliang98 in #2092
- Fix: output total time in seconds by @caic99 in #2120
- Fix: error for printing TITLE and error for underlying error in ewald force&stress part by @dyzheng in #2132
- Fix: output Hamiltonian and Overlap matrix for each k points (out_mat_hs) by @dyzheng in #2135
- Fix: memory leak in sltk_grid.cpp by @dyzheng in #2141
- Fix: update version number for v3.2.x by @dyzheng in #2143
- Fix: fix bug in relax_old by @YuLiu98 in #2150
Documentation
- Doc: change Chinese punctuation by @Qianruipku in #2051
- Doc : format Hefei-NAMD.md by @lyb9812 in #2106
- Doc: update docs, solve #2095 by @dyzheng in #2130
- Docs: update docs for mixing_beta by @YuLiu98 in #2142
New Contributors
- @hzhang2001 made their first contribution in #2094
- @kirk0830 made their first contribution in #2133
Full Changelog: v3.1.4...v3.2.0
v3.1.4
What's Changed
- Test:UT of zeros by @yuhuan12 in #1929
- Test: UnitTest for ComplexMatrix by @SeptemberMy in #1942
- Test: add UT for math_chebyshev by @Qianruipku in #1946
- Test: add UT for class K_Vectors by @hongriTianqi in #1943
- Fix: a bug in klist.cpp by @hongriTianqi in #1947
- Perf: optimized memory cost in psi initialization for Pseudopotential files without atomic wfc by @dyzheng in #1950
- Test: add UT for HSolver base class by @dyzheng in #1952
- Fix: Add some debug messages for device setting. by @denghuilu in #1957
- Refactor: Add __ENABLE_FLOAT_FFTW macro to control the usage of single precision FFTW library. by @denghuilu in #1958
- Test: add UT for module_xc by @wenfei-li in #1964
- Refactor: Remove global variable from module_pw by @denghuilu in #1963
- fix: delete all __MIX_PRECISION & fix bug in chebyshev by @Qianruipku in #1973
- fix(vdw): radius_ devided by BOHR2A when unit is Angstrom by @pxlxingliang in #1967
- Build: add executable to cuda docker image by @caic99 in #1962
- Test: Complete the unit tests of opt_CG and opt_TN. by @sunliang98 in #1971
- Fix : cmake file for test_xc by @wenfei-li in #1974
- CI: add dependabot by @njzjz in #1953
- Refactor: move variable_cell.* to module_relax by @YuLiu98 in #1972
- Test:UT of mkdiratom by @yuhuan12 in #1961
- Refactor: refactor mulliken charge with density matrix and add SOC support by @1041176461 in #1976
- Refactor: delete redundant codes by @Qianruipku in #1975
- Test:UnitTest for Vector2Ptr_v3double by @SeptemberMy in #1985
- CI: add Makefile + intel building test by @Liu-RX in #1965
- test(vdw): add UT of module_vdw by @pxlxingliang in #1977
- Test: add UT for hsolver_pw.cpp by @dyzheng in #1986
- fix: reduce memory when doing postprocess of sdft by @Qianruipku in #1991
- Test : add UT for v_xc by @wenfei-li in #1980
- Test: add UT for Unitcell by @hongriTianqi in #1997
- Refactor: control components written in MD_dump by @YuLiu98 in #1982
- Test:UT of openlog by @yuhuan12 in #1989
- Test:UnitTest for SphericalBesselsjp by @SeptemberMy in #2000
- Feature: OpenMP for PW_Basis_K by @Alcanderian in #1998
- UT of MemAvalibale,TEST_LEVEL and Tamplate of V*M by @yaohaoze in #2004
- Fix: fix bug caused by out_hs2_interval by @YuLiu98 in #2005
- Test: add unitcell_test_r for UnitCell reading pp by @hongriTianqi in #2009
- Test: add unit test for class Numerical_Nonlocal_Lm by @jinzx10 in #2010
- Unit Test:void matrix::fill_out(const double x) by @KCJ2000 in #2014
- Symmetry: debug and new features by @maki49 in #1904
- Fix: memory leak in destructor of Operator by @dyzheng in #2013
- remove an unnecessary cout by @maki49 in #2017
- Test: simplify unitcell ut files by @hongriTianqi in #2015
- Test: add UT for hsolver_pw_sdft by @dyzheng in #2011
- Test: remove coverage on some advanced codes in module_io for future … by @hongriTianqi in #2021
- Test:update the global_file_test.cpp by @yuhuan12 in #2024
- Test: add unit test for class Numerical_Orbital_Lm & test name fix by @jinzx10 in #2025
- Refactor: rename some MD input parameters by @YuLiu98 in #2012
- fix: modify atom-sort algorithm and corresponding unit test by @maki49 in #2030
- Test:UnitTest for tool_title by @SeptemberMy in #2020
- Fix : fix leak of memories by @Qianruipku in #2027
- Test: add unit test for class LCAO_Orbitals by @jinzx10 in #2037
- Fix: a bug in output title by @hongriTianqi in #2041
- Fix: bug caused by all atoms fixed in md by @YuLiu98 in #2028
- fix:bug segment fault caused by pzhegvx() by @Qianruipku in #2038
- fix a bug in
rhog_symmetry
by @maki49 in #2039 - Test: add more ut for UnitCell class by @hongriTianqi in #2035
- Fix: a default value in tool_title.h by @hongriTianqi in #2043
- Feature: optimized default settings of mixing_beta and mixing_gg0 by @dyzheng in #2036
New Contributors
Full Changelog: v3.1.3...v3.1.4
v3.1.3
Features and Performance
- Perf: cache address in pw_transform by @caic99 in #1885
- Feature : output electronic dipole moment for tddft by @lyb9812 in #1887
- Feature : print derivative of Hamiltonian matrix by @wenfei-li in #1880
- Perf: init sender-buffer once in Gint for gamma_only by @dyzheng in #1895
- Feature: enable TDDFT to support multiple electric field simulations by @1041176461 in #1889
- Feature: add bessel parameters in Input, for fixing generator of orbital file by @dyzheng in #1891
- Perf(LCAO): Various optimizations of detail code by @Alcanderian in #1901
Build and Compilation
Refactor and Code-cleanup
- Refactor: split write_dos_lcao and write_dos_pw into separate functions by @hongriTianqi in #1890
- Refactor: rearranged files in src_parallel and deleted src_parallel directory by @dyzheng in #1922
- Refactor: read pseudopotentials in esolver_fp by @YuLiu98 in #1926
CI and Test coverage
- Test: add UT for functions in class abfs-vector3_order by @hongriTianqi in #1878
- Test: add UT for constructor functions in module_base by @hongriTianqi in #1882
- Test: update UT of blas_connector by @hongriTianqi in #1881
- Test: add a UT in klist_test.cpp by @hongriTianqi in #1897
- Test: update UT of read_pp by @hongriTianqi in #1900
- Test: add UT for pseudo_nc by @hongriTianqi in #1911
- Test:UnitTest for ComplexArray and related functions by @SeptemberMy in #1910
- Test: UnitTest for overloading of operator "()" by @SeptemberMy in #1917
- Test: add UT for class atom_pseudo by @hongriTianqi in #1919
- Test: add UT for class Atom by @hongriTianqi in #1923
- Test: libm code coverage by @Alcanderian in #1933
Bug fix
- Fix: fix UT error related to issue 1828 by @denghuilu in #1883
- Fix: update Makefile and CMakeLists.txt for dp by @YuLiu98 in #1888
- Fix: no istate.info output by @hongriTianqi in #1896
- Fix: Libxc with soc by @dyzheng in #1879
- Fix: fix C interface for DeePMD-kit by @YuLiu98 in #1894
- Fix: Minor bug fixed and efficiency improved in LibRI and LibComm by @ouqi0711 in #1907
- fix: bug when stru_file=../STRU by @Qianruipku in #1930
- Fix: no function found in parallel tests by @hongriTianqi in #1931
- Fix: a bug in atom_spec_test by @hongriTianqi in #1934
- Fix: warning in #1939 and add documentations by @PeizeLin in #1939
Full Changelog: v3.1.2...v3.1.3
v3.1.2
Features and Performance
- Feature : out_mat_t, which prints the kinetic energy matrix by @wenfei-li in #1874
- Feature: Added DeePKS+SOC example by @ouqi0711 in #1866
- Perf: optimize default setting of bx/by/bz by @dyzheng in #1861
- Feature: OpenMP for rho init and Charge_Mixing by @Alcanderian in #1847
- Perf: Better OpenMP Parallelization for cal_force_cc and cal_force_scc by @Alcanderian in #1840
- Perf: reuse ylm vector to avoid allocation by @caic99 in #1837
- Feature: output R matrix at each MD step by @1041176461 in #1825
- Feature: Enable SOC calculation with DeePKS model loaded by @ouqi0711 in #1814
- Feature: add function to parse expression by @1041176461 in #1801
Build and Compilation
- Build: enable libxc by default in docker images. by @caic99 in #1865
- Build: update docker build action by @caic99 in #1848
- Build: bump docker actions by @caic99 in #1842
- Build: add elpa with OpenMP threading in intel image by @caic99 in #1838
- Build: fix err in compiling with coverage on by @hongriTianqi in #1836
- Build: support DeePMD-kit C library by @njzjz in #1742
Refactor and Code-cleanup
- Refactor: locate more functions into namespace ModuleIO by @hongriTianqi in #1856
- Refactor: modify the eys-catched warning when atoms are too close by @pxlxingliang in #1846
- Refactor: delete src_external and src_pdiag, move module deepks and dftu into hamilt_lcao by @dyzheng in #1843
- Refactor: move module symmetry and neighbor into cell by @dyzheng in #1841
- Refactor: rearrange code files paths for module hamiltonian, decompose to "general", "pw", "lcao" 3 parts. by @dyzheng in #1826
- Fix: add repo and docs site to output by @caic99 in #1816
- refactor: add an eye-catched warning when setted-threads larger than hardware availability by @pxlxingliang in #1813
- Rebuild using_ScaLAPACK_complex function in LCAO_evolve.cpp by @haozhihan in #1803
- Refactor: move place of definition of read_dm and write_dm by @hongriTianqi in #1800
- Refactor: move input and input_conv into module_io by @hongriTianqi in #1799
CI and Test coverage
- Test: cover all functions in global_function.h by @hongriTianqi in #1876
- Test: make lcov cover complexArrayxAlloc by @hongriTianqi in #1867
- Test: update cmake and support files in module_cell by @hongriTianqi in #1849
- Test: Add unit test to increase the code coverage rate of module_pw by @Qianruipku in #1845
- Test: update UT of read_pp_upf by @hongriTianqi in #1834
- Test: UT of matrixAlloc by @yuhuan12 in #1823
- Test: UT of line search in relax_new by @hongriTianqi in #1822
- Test: UT of read_pp_upf by @hongriTianqi in #1817
- Test:UT of IntArrayAlloc by @yaohaoze in #1812
- Test: update UT of global_function by @hongriTianqi in #1807
- Test: Replace test function in Ylm class as gtest by @ruiyiQM in #1805
Bug fix
- Fix: fix a typo in ComplexArray by @hongriTianqi in #1872
- Fix: fix cal_force_scc by @Alcanderian in #1870
- Fix : dftu force and stress by @wenfei-li in #1868
- Fix: minor bug fixed for deepks bandgap test by @ouqi0711 in #1869
- Fix : autotest for multi-kpoint tddft by @lyb9812 in #1862
- Fix : force matrix not allocated but used by @wenfei-li in #1854
- Fix: stress&force error with PW code and large smearing_sigma by @dyzheng in #1835
- Fix: fix bug in EXX nscf calculation by @1041176461 in #1832
- Fix: numerical issue fixed for bandgap printing in NSCF case by @ouqi0711 in #1831
- Fix: keep using when not def _OPENMP by @pxlxingliang in #1824
- Fix: fix HUGE_VAL for Azure conda_build by @Alcanderian in #1821
Documentation
New Contributors
Full Changelog: v3.1.1...v3.1.2
v3.1.1
What's Changed
Features
- Add single precision support for multi-device ops by @denghuilu in #1729
- Add multi-device support for HPsi(Meta) by @denghuilu in #1733
- enables NSCF calculation for DeePKS by @ouqi0711 in #1746
- enables multi-k bands training for DeePKS by @ouqi0711 in #1731
- Add ROCm implementation for ABACUS! by @denghuilu in #1726
- Add pure single precision support for ABACUS(PW Basis) by @denghuilu in #1763
- Add single precision support for ROCm operators by @denghuilu in #1767
- OpenMP for Gint_k::folding_vl_k by @Alcanderian in #1764
- mixing of locale in DFT+U by @wenfei-li in #1743
- enable relax and cell-relax for lj/dp pot by @YuLiu98 in #1762
- OpenMP for OperatorLCAO::folding_fixed by @Alcanderian in #1772
- add input parameter td_print_eij and td_edm for tddft by @lyb9812 in #1789
- OpenMP for Local_Orbital_Charge::cal_dk_k by @Alcanderian in #1773
Build and Compilation
- add an option to enable native compilation optimization by @njzjz in #1724
- use Release for default build type by @caic99 in #1722
- trim cmake flags by @caic99 in #1784
Refactor and Code-cleanup
- Remove unnecessary transpose operations in CG-subspace by @haozhihan in #1723
- Remove unnecessary transpose operations in Davidson by @haozhihan in #1727
- Remove all CUDA APIs from modules by @denghuilu in #1715
- Add device template for member functions by @denghuilu in #1707
- New RPA interface with LibRI by @Srlive1201 in #1717
- Refactor the code structure of multi-device operators by @denghuilu in #1749
- modify the default of scf_nmax to 100 by @pxlxingliang in #1765
- electric field in tddft by @lyb9812 in #1774
- port some libm source file to abacus: sincos, exp, cexp. and… by @Alcanderian in #1780
- change folder name src_io to module_io by @hongriTianqi in #1793
- new memory record interface by @dyzheng in #1794
CI and Test coverage
- Add device template for static members of class DiagoIterAssist by @denghuilu in #1713
- add ut for default_2 and check of input.cpp by @hongriTianqi in #1725
- add UT for winput.cpp by @hongriTianqi in #1730
- Add a unit test for klist.cpp ("set_kup_and_kdw_after_vc") by @ruiyiQM in #1736
- add UT for output.cpp by @hongriTianqi in #1739
- remedy updaterhok_pw_test & add ut for write_wfc(bit) by @hongriTianqi in #1747
- add UT for rwstream.cpp by @hongriTianqi in #1741
- add 2 warnings in input.cpp by @hongriTianqi in #1752
- update test 702_DP_Al for dp pot by @YuLiu98 in #1759
- add unit tests for module_md by @YuLiu98 in #1771
- UnitTest for realArrayAlloc by @SeptemberMy in #1788
- UT of complexArrayxAlloc by @hongriTianqi in #1786
- Delete ntype by @dyzheng in #1770
- add e2e tests for get_S out_proj_band out_pot and out_dm1 by @hongriTianqi in #1732
- add e2e example of W90 in pw by @hongriTianqi in #1734
- add an example of spin4 & out_mat_hs by @hongriTianqi in #1748
- fix 207_NO_KP_OHS_SPIN4 by @hongriTianqi in #1757
- UnitTest for ZEROS by @SeptemberMy in #1798
Bug fix
- Fix memory leak within pseudopot_cell_vnl::getvnl function by @denghuilu in #1714
- Fix RI related compilations errors when using clang compiler by @xinyangd in #1721
- fix memory leak in
Local_Orbital_Charge
by @caic99 in #1720 - add atomic magnetism output in mulliken.txt by @dyzheng in #1738
- correct the INPUT in examples/dft_plus_u/NiO by @pxlxingliang in #1745
- fix para nelec in gatefield by @YuLiu98 in #1751
- fix bugs of multi-kpoints for tddft and add autotest by @lyb9812 in #1754
- mulliken charge for spin-down with gamma_only mode by @dyzheng in #1755
- bug of extreme large number of k-points during skipping non-occupied bands by @dyzheng in #1769
- two too-long timer function print info by @Liu-RX in #1768
- use
static_cast
for init list by @caic99 in #1783 - initial magnetization with both element and atoms by @dyzheng in #1778
- update version-number output to v3.1 by @dyzheng in #1792
Documentation
- fix a typo in quick_start/input.md by @hongriTianqi in #1719
- add guidelines on runtime errors and debugging. by @caic99 in #1737
- add a symlink to citation conforming with GitHub by @caic99 in #1750
- add instrutions for launching abacus from a custom dir. by @caic99 in #1756
New Contributors
- @njzjz made their first contribution in #1724
- @SeptemberMy made their first contribution in #1788
Full Changelog: v3.1.0...v3.1.1