alpha06

The next alpha release of EDAM-bioimaging, alpha06.

• Added and refined topics and synonyms in sample preparation and tomography, and finalised coverage of imaging techniques (all of these to the high-level extent that influences choices of downstream analysis)
• Created a concise but comprehensive ontology of Machine learning, Artificial intelligence, and Clustering (to the level relevant in particular in bioimaging, biosciences, but also scientific data analysis in general; left todo: operations related to training/parameter optimisation)
• A couple of other editions - and a lot of refined annotation - in operations and topics
• Work in progress (WIP) on definitions, rdfs:comments, and seeAlso links

Major contributions are from the members and guests of the COMULIS & NEUBIAS COST Actions. Editors and the main contributors to this particular version alpha06 are listed in #18. All contributors are listed on the top of the OWL file.

Permanent location for browsing EDAM-bioimaging version alpha06: https://webprotege.stanford.edu/#projects/c149e738-4437-456c-843c-eb5861a36854/edit/Classes. Free registration required, and commenting enabled (see the brief contribution guidelines or CONTRIBUTING first).

The bulk of the work on alpha06 is in #18. All commits can be seen at alpha06 tag.

alpha05

The next alpha release of EDAM-bioimaging, alpha05.

• Added some missing Operations and some clean-up of the hierarchy of Operations
• Added Topics (especially related to multimodal imaging, and also some missing|emerging modalities) and some clean-up of the hierarchy of Topics
• Added some Data concepts
• Added some definitions, comments, synonyms, related terms, and links to Wikipedia and articles

Permanent location for browsing EDAM-bioimaging version alpha05: https://webprotege.stanford.edu/#projects/d9f9a5b2-d746-430a-a2cd-9aa745764079/edit/Classes. Free registration required, and commenting enabled (see the brief contribution guidelines or CONTRIBUTING first).

The bulk of the work on alpha05 is in #13. All commits can be seen at alpha05 tag; the ones on 4th and 5th February 2019 are the changes between versions alpha04 and alpha05.

The changes in the OWL file between versions alpha04 and alpha05 can nicely be seen HERE.

alpha04

The next alpha release of EDAM-bioimaging, alpha04.

Further improvements in the Operation and Topic sub-ontologies (beta quality): added links to Wikipedia and to other ontologies, added some definitions and comments, added some missing concepts, clean-up of hierarchy and misleading concepts.
(The Format sub-ontology and partially Data are still very alpha.)

Permanent location for browsing EDAM-bioimaging version alpha04: https://webprotege.stanford.edu/#projects/861eadbe-8e38-46fc-a59e-6d45a1b6f25e/edit/Classes. Free registration required, and commenting enabled (see the brief contribution guidelines or CONTRIBUTING first).

The bulk of the work on alpha04, and additional information including credits, is in 27daa63. All commits can be seen at alpha04 tag; the ones since 29th January 2017 are the changes between versions alpha03 and alpha04.

The changes in the OWL file between versions alpha03 and alpha04 can nicely be seen HERE.

alpha03

The next alpha release of EDAM-bioimaging, alpha03.

Improvements in the Operation and Topic sub-ontologies (beta quality). (The Format sub-ontology and partially Data are still very alpha.)

Permanent location for browsing EDAM-bioimaging version alpha03: https://webprotege.stanford.edu/#projects/40a89525-b6d6-42f2-a4c1-88e7fb1c1f86/edit/Classes. Free registration required, and commenting enabled (see the brief contribution guidelines or CONTRIBUTING first).

The bulk of the work on alpha03, and additional information including credits, is in bec4633 and #6. All commits can be seen at alpha03 tag; the ones since September 2017 are the changes between versions alpha02 and alpha03.

The changes in the OWL file between versions alpha02 and alpha03 can nicely be seen HERE.

alpha02

The next alpha release of EDAM-bioimaging, alpha02.

Massive improvements in the Operation and Topic sub-ontologies (beta quality), and some in the Data sub-ontology. (Thus especially the Format sub-ontology and partially Data are still very alpha.)

Permanent location for browsing EDAM-bioimaging version alpha02: http://webprotege.stanford.edu/#projects/f2cd721e-0f26-4b05-9ce2-ce20d4860442/edit/Classes

Credit: The NEUBIAS EDAM-bioimaging team ([email protected]). Details in #2 and 6003cee.

alpha01

The first alpha release of EDAM-bioimaging. Deployed to http://bioportal.bioontology.org/ontologies/EDAM-BIOIMAGING/?p=classes