v3.4.2

What's Changed

The purpose of this release is to fix deployment.

• Fix ci by @AaronDJohnson in #397
• Update deprecated actions by @AaronDJohnson in #398
• Update Actions by @AaronDJohnson in #399

Full Changelog: v3.4.1...v3.4.2

v3.4.1

What's Changed

• bump version and update twine uploads by @AaronDJohnson in #395

Full Changelog: v3.4.0...v3.4.1

v3.4.0

What's Changed

• update CI versions by @AaronDJohnson in #330
• Fix to work with flake8 6.0.0 by @aarchiba in #335
• Fix pre-commit and support VSCode .venv/ by @aarchiba in #338
• Fixed the TypeError in test_vector_parameter_like by @vhaasteren in #352
• Added a .readthedocs.yaml config file for Enterprise by @vhaasteren in #360
• Add Python 3.11, Remove Python 3.7 by @AaronDJohnson in #362
• Bugfix for bug #358 by @vhaasteren in #359
• add conda stuff to docs by @paulthebaker in #336
• Fast Sherman Morrison for Kernel Ecorr by @vhaasteren in #343
• Allow for index arrays in ShermanMorrison by @vhaasteren in #356
• Astropy optional by @vhaasteren in #368
• fix missing cholmod.h by @AaronDJohnson in #378
• Fix CI issues on dev by @AaronDJohnson in #381
• Merge EPTA version part 1 by @siyuan-chen in #373
• Merge EPTA version part 2 by @siyuan-chen in #374
• Faster sparse matrix Cholesky by @vhaasteren in #376
• Change ssb_to_psb_xyz_ICRS to not pass PINT a quantity by @tcromartie in #382
• Merging master into dev by @vhaasteren in #383
• Percentage Point Functions for parameters by @vhaasteren in #353
• Modifications to the Pulsar class by @vhaasteren in #365
• Properly address units in PintPulsar position by @vhaasteren in #370
• Fix CI by @AaronDJohnson in #391
• Update selections.py for "CHIME" and "VEGAS" by @alyssacassity in #393
• Merge dev and do new release by @vhaasteren in #386

New Contributors

• @aarchiba made their first contribution in #335
• @vhaasteren made their first contribution in #352
• @tcromartie made their first contribution in #382
• @alyssacassity made their first contribution in #393

Full Changelog: v3.3.3...v3.4.0

v3.3.3

Minor fix to allow undefined DMX errors to propagate in PINTPulsar.

v3.3.2

With this release, Python 3.6 is no longer supported by enterprise.

New:

• Upgrading black to 22.3.0 by @vallis in #318
• Support Python 3.10 by @vallis in #320
• Add Truncated Normal parameters by @paulthebaker in #322
• Modify dmequad semantics in WidebandTimingModel to match MeasurementNoise by @vallis in #324
• Allow users to set pulsar flags in pulsars.py in 71fdf52
• Add test for parameter.LinearExp in 4fef5c3

Bug Fixes:

• Fix caching bug in signals.deterministic_signals.Deterministic by @vallis in #325
• np.allclose used over == in parameter tests in 3968d72

v3.3.1

Bug fixes:

• Fix np.random.multivariate_normal call for joint Gaussian variables
• Fix sksparse convention bug in ConditionalGP

v3.3.0

Modify measurement-noise interface to clarify conventions:

• previously we would add EFAC + EQUAD noise separately (MeasurementNoise(efac=...), EquadNoise(log10_equad=...)), resulting in total variance EFAC^2 toaerr^2 + EQUAD^2 (the "temponest" convention);
• from now on, we will use the combined object MeasurementNoise(efac=...,log10_t2equad=...), resulting in total variance EFAC^2 x (toaerr^2 + EQUAD^2) (the tempo/tempo2/pint convention), note the change of variable name;
• EFAC noise alone is obtained with MeasurementNoise(efac=...);
• the old convention is obtained by adding MeasurementNoise(efac=...) and TNEquadNoise(log10_tnequad=...).

v3.2.3

Various bugfixes:

• pulsar.py: make all Pulsar attributes double precision so pickles can be loaded on M1 machines;
• parameter.py: implement priors without scipy to avoid horrible slowdown;
• gp_signals.py: fix use_svd bug (flag was ignored);

and API enhancements:

• bump libstempo to 2.4.4 (includes tspan option in toasim);
• pulsar.py: add telescope attribute to Pulsar objects;
• gp_signals.py: add use_svd to MarginalizingTimingModel;
• signal_base.py: add convenience functions (pulsarmodels, signals) and dict-like interface to access SignalCollection objects in a PTA, and Signal objects in a SignalCollection;
• utils.py: add ConditionalGP interface to compute conditional means and samples of GP coefficients and realizations given the hyperparameters. Replaces get_coefficients().

v3.2.2

Various bugfixes merged from master: readthedocs documentation builds correctly; update caching to support phase scrambles in e_e; bumped PINT and libstempo versions.

v3.2.1

Various bugfixes merged from master: BayesEphem works with PINT; fixed regression in sorting pulsar flags with PINT; PintPulsar returns barycentered TOAs; likelihood catches appropriate exception from Cholesky.