Sync: ncbo v5.33.0 release #15

alexskr · 2024-10-08T16:24:19Z

This PR merges releases v5.29.1 through v5.33.0 from ncbo/ontologies_linked_data

What's Changed

Feature: Multilingual Support - Add search and languages serialization by @syphax-bouazzouni in Feature: Multilingual Support - Add search and languages serialization ncbo/ontologies_linked_data#199
Augment the User model with GitHub ID and ORCID iD by @jvendetti in Augment the User model with GitHub ID and ORCID iD ncbo/ontologies_linked_data#201
Fix: Some lost code after submission refactoring PR and fix a bug the context language been empty by @syphax-bouazzouni in Fix: Some lost code after submission refactoring PR and fix a bug the context language been empty ncbo/ontologies_linked_data#204
Feature: add :ontologies to the serialize_default of the group model by @syphax-bouazzouni in Feature: add :ontologies to the serialize_default of the group model ncbo/ontologies_linked_data#146
Update Ruby: v2.7 → v3.0 by @alexskr in Update Ruby: v2.7 → v3.0 ncbo/ontologies_linked_data#214
Proposed refactor: convert notification bodies to ERB templates by @jvendetti in Proposed refactor: convert notification bodies to ERB templates ncbo/ontologies_linked_data#197
Fix: Use Serillize never to not output sensitive data by @syphax-bouazzouni in Fix: Use Serillize never to not output sensitive data ncbo/ontologies_linked_data#216

…ocessing steps

add back changes in PR#182 that were overwritten by PR#143

Develop to master merge, release v5.30.0

some of the changes introduced in PR #153 were rolled back by PR #143 merge

Fix: Some lost code after submission refactoring PR and fix a bug the context language been empty

…erialization' into develop

Develop to multilingual branch merge

…arch-and-languages-serialization Merge pull request #205 into develop

…rialize-default Feature: add :ontologies to the serialize_default of the group model

…p model"

…ialize-default Revert "Feature: add :ontologies to the serialize_default of the group model"

implements PR #146

Develop to master merge, release v5.31.0

change StoreError to StandardError

File/Dir permission issue is still unresolved, so anyone working on troubleshooting will need to manually re-enable logging when needed. ncbo/bioportal-project#323

* add ruby v3.0 support * remove ruby v2 compatibility tweaks * use docker compose instead of docker-compose

Develop to master merge, release v5.32.0

Proposed refactor: convert notification bodies to ERB templates

Fix: Use Serillize never to not output sensitive data

Develop -> Master merge, Release v5.33.0

syphax-bouazzouni and others added 30 commits April 4, 2022 12:39

add an abstraction to the diff tool

6625ca9

add submission process operation abstraction

84ac55b

auto lint refactor of ontologies_linked_data.rb

f67e6db

add the requires of the services modules

aa0d4c8

add the SubmissionArchiver operation

8883e13

adding the RDF generator operation

d31637d

adding the OntologySubmissionIndexer operation

1dbca52

adding the SubmissionPropertiesIndexer

7bea7e4

adding the SubmissionMetricsCalculator operation

e658b66

adding the SubmissionDiffGenerator operation

4e1aff5

add the submission processor operation

4b1e4ec

move the submission operations to an external module

0bce026

change the index argument name from 'index_commit' to just 'commit'

85a25e4

add :ontologies to the serialize_default of the group model

efc0709

Merge branch 'upstream' into pl/refacotor-ontology-submission

b09fd4e

Fix NameError: undefined subject

604e5cb

Create ERB template for OBO Foundry notification

e3de5fe

Generate notification body from template

bd2ad7f

Merge branch 'master' into pl/refacotor-ontology-submission

c879069

fixes based on feedback from @syphax-bouazouni in #194

d885010

Gemfile.lock update

ab7b2f0

Gemfile.lock update after merging pull request #150

cf8100e

Gemfile.lock update

5f9846a

merged #143 - Refactor: ontology_submission.rb file to isolate the pr…

e2a27e4

…ocessing steps

merged #143 - Refactor: ontology_submission.rb file to isolate the pr…

cf3ff84

…ocessing steps

use owlapi_wrapper for max_depth calculation

da1642e

add back changes in PR#182 that were overwritten by PR#143

Gemfile.lock update

b10c64a

Merge pull request #198 from ncbo/develop

308d6a9

Develop to master merge, release v5.30.0

reset branch specifier to master

8157c65

reapply PR #153

a3f6cf0

some of the changes introduced in PR #153 were rolled back by PR #143 merge

mdorf and others added 28 commits May 20, 2024 15:04

re-implemented the missing changes removed by the multi-lingual PRs

829e0ea

fixed failing unit tests

6dc0ab9

Merge pull request #204 from ontoportal-lirmm/pr/sync-agroportal-ncbo

112e39b

Fix: Some lost code after submission refactoring PR and fix a bug the context language been empty

Merge branch 'feature/multilingual-support-add-search-and-languages-s…

47fa900

…erialization' into develop

Merge pull request #205 from ncbo/develop

c2beff6

Develop to multilingual branch merge

Merge pull request #206 from ncbo/feature/multilingual-support-add-se…

b9a6a9d

…arch-and-languages-serialization Merge pull request #205 into develop

Gemfile.lock update

0480874

Merge pull request #146 from ontoportal-lirmm/pr/add-ontologies-to-se…

c8c78d4

…rialize-default Feature: add :ontologies to the serialize_default of the group model

Revert "Feature: add :ontologies to the serialize_default of the grou…

db5a888

…p model"

Merge pull request #207 from ncbo/revert-146-pr/add-ontologies-to-ser…

67bfd05

…ialize-default Revert "Feature: add :ontologies to the serialize_default of the group model"

add :ontologies to the serialize_default of the group model

013a322

implements PR #146

Merge pull request #210 from ncbo/develop

f339344

Develop to master merge, release v5.31.0

Gemfile update

70fc2c8

typo fix

30a367b

change StoreError to StandardError

disable debug logging (issue not fully resolved)

f32bc17

File/Dir permission issue is still unresolved, so anyone working on troubleshooting will need to manually re-enable logging when needed. ncbo/bioportal-project#323

use docker compose instead of docker-compose

c30887e

Update Ruby: v2.7 → v3.0 (#214)

fa8511d

* add ruby v3.0 support * remove ruby v2 compatibility tweaks * use docker compose instead of docker-compose

Gemfile.lock update

a22fae3

Merge pull request #215 from ncbo/develop

a9da098

Develop to master merge, release v5.32.0

Gemfile.lock update

6a6bde7

fix : prevent serialization of sensitive data

d455d9f

remove syntax error

0926cd4

Gemfile.lock update

7dbf782

Merge pull request #197 from ncbo/refactor/erb-notification

5b44098

Proposed refactor: convert notification bodies to ERB templates

fix typo

8572cd2

Merge pull request #216 from ontoportal-lirmm/pr/fix/serillize-never

812dd78

Fix: Use Serillize never to not output sensitive data

Merge pull request #217 from ncbo/develop

6b1df08

Develop -> Master merge, Release v5.33.0

reset branch specifier to master

9ab4be4

alexskr marked this pull request as ready for review October 8, 2024 16:34

alexskr merged commit 23c63a2 into ontoportal:master Oct 8, 2024
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Sync: ncbo v5.33.0 release #15

Sync: ncbo v5.33.0 release #15

alexskr commented Oct 8, 2024 •

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Sync: ncbo v5.33.0 release #15

Sync: ncbo v5.33.0 release #15

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What's Changed

alexskr commented Oct 8, 2024 •

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