Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Dev #242

Merged
merged 51 commits into from
Jun 28, 2022
Merged

Dev #242

merged 51 commits into from
Jun 28, 2022

Conversation

stemangiola
Copy link
Owner

No description provided.

@stemangiola
implementation parallel cibersort
1c68731
@stemangiola
replace if_else once
11e05b3
@stemangiola
make non standard columns not a problem
29efe9c
@stemangiola
polish and make more robust also for SE
758e08b
@stemangiola
fix bug
442249f
@stemangiola
fix bug
948256a
@stemangiola
simplified aggregate for se and add test
558cf13
@stemangiola
implement new vocabulary
32f915f
@stemangiola
replace if_else once
f4f5822
@stemangiola
Merge branch 'dev' of github.com:stemangiola/tidybulk into dev
f8d38ba
@stemangiola
allow other feature column for SE
60f4260
@stemangiola
fix typo
fedd878
@stemangiola
fix tidybulk()
f93a90a
@stemangiola
avoid human annotation
601aa4a
@stemangiola
update docs
5ddf54a
@stemangiola
fixed pivot_
1a1a758
@stemangiola
deprecate .contrasts and update tests
a284fc6
@stemangiola
temporary save to work on other branch
78c6838
@stemangiola
get as_tibble from tidySE for tidybulk()
0f31e39
@stemangiola
fix tests
7b4b310
@stemangiola
fix dependencies
4a867ff
@stemangiola
fix examples
a76efa9
@stemangiola
fix tests
d470795
@stemangiola
fix tests
9f08092
@stemangiola
fix back deconvolution
6def641
@stemangiola
Merge pull request #237 from stemangiola/SE_to_tidybulk_new_vocabulary
b31ffe0 
implement new vocabulary
@stemangiola
merge dev
c0f2962 
Merge branch 'dev' into polish_aggregation_tibble

Conflicts:
	R/methods_SE.R
	R/utilities.R
	tests/testthat/test-bulk_methods_SummarizedExperiment.R
@stemangiola
fix aggregation
0bc0619
@stemangiola
Merge branch 'dev' into deprecate_dot_contrasts
2b729ef
@stemangiola
Merge pull request #239 from stemangiola/deprecate_dot_contrasts
18f4cf0 
deprecate .contrasts and update tests
@stemangiola
Merge pull request #238 from stemangiola/allow-mapping-to-other-genomes
86d3107 
avoid human annotation
@stemangiola
Merge pull request #236 from stemangiola/robustify_deconvolution_SE
73175cd 
allow other feature column for SE
@stemangiola
deprecation untested
b97eec0
@stemangiola
deprecation untested
2197096
@stemangiola
Merge branch 'deprecate_log_transform_for_function' of github.com:ste…
38fcfc0 
…mangiola/tidybulk into deprecate_log_transform_for_function
@stemangiola
fix CHECK
4e3b77c
@stemangiola
add docs
a439f77
@stemangiola
fix CHECKs
a1719ee
@stemangiola
Merge pull request #235 from stemangiola/polish_aggregation_tibble
6898f8d 
Polish aggregation tibble
@stemangiola
Merge pull request #244 from stemangiola/parallel-cibersort
1b48d42 
implementation parallel cibersort
@stemangiola
add news and version UP
ffc0680
@stemangiola
use |> for tests
c3e317c
@stemangiola
make tests more detailed
527ca24
@stemangiola
deprecation untested
b399314
@stemangiola
fix CHECKs
0690a9f
@stemangiola
Merge branch 'deprecate_log_transform_for_function' of github.com:ste…
0c25324 
…mangiola/tidybulk into deprecate_log_transform_for_function
@stemangiola
drop tsne test
38d0688
@stemangiola
deprecation untested
c00ae27
@stemangiola
fix CHECKs
f47d148
@stemangiola
Merge branch 'deprecate_log_transform_for_function' of github.com:ste…
9c8ef7a 
…mangiola/tidybulk into deprecate_log_transform_for_function
@stemangiola
Merge pull request #241 from stemangiola/deprecate_log_transform_for_…
74c026f 
…function

deprecation untested
@stemangiola stemangiola merged commit 9d98380 into master Jun 28, 2022
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers
No reviews
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.
1 participant
@stemangiola