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Dev #242

Merged
merged 51 commits into from
Jun 28, 2022
Merged

Dev #242

merged 51 commits into from
Jun 28, 2022

Commits on Jun 7, 2022

  1. implementation parallel cibersort

    @stemangiola
    stemangiola committed Jun 7, 2022
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Commits on Jun 12, 2022

  1. replace if_else once

    @stemangiola
    stemangiola committed Jun 12, 2022
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Commits on Jun 13, 2022

  1. make non standard columns not a problem

    @stemangiola
    stemangiola committed Jun 13, 2022
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  2. polish and make more robust also for SE

    @stemangiola
    stemangiola committed Jun 13, 2022
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  3. fix bug

    @stemangiola
    stemangiola committed Jun 13, 2022
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  4. fix bug

    @stemangiola
    stemangiola committed Jun 13, 2022
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  5. simplified aggregate for se and add test

    @stemangiola
    stemangiola committed Jun 13, 2022
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Commits on Jun 24, 2022

  1. implement new vocabulary

    @stemangiola
    stemangiola committed Jun 24, 2022
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  2. replace if_else once

    @stemangiola
    stemangiola committed Jun 24, 2022
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  3. Merge branch 'dev' of github.com:stemangiola/tidybulk into dev

    @stemangiola
    stemangiola committed Jun 24, 2022
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  4. allow other feature column for SE

    @stemangiola
    stemangiola committed Jun 24, 2022
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  5. fix typo

    @stemangiola
    stemangiola committed Jun 24, 2022
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  6. fix tidybulk()

    @stemangiola
    stemangiola committed Jun 24, 2022
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  7. avoid human annotation

    @stemangiola
    stemangiola committed Jun 24, 2022
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  8. update docs

    @stemangiola
    stemangiola committed Jun 24, 2022
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  9. fixed pivot_

    @stemangiola
    stemangiola committed Jun 24, 2022
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Commits on Jun 25, 2022

  1. deprecate .contrasts and update tests

    @stemangiola
    stemangiola committed Jun 25, 2022
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  2. temporary save to work on other branch

    @stemangiola
    stemangiola committed Jun 25, 2022
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  3. get as_tibble from tidySE for tidybulk()

    @stemangiola
    stemangiola committed Jun 25, 2022
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  4. fix tests

    @stemangiola
    stemangiola committed Jun 25, 2022
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  5. fix dependencies

    @stemangiola
    stemangiola committed Jun 25, 2022
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  6. fix examples

    @stemangiola
    stemangiola committed Jun 25, 2022
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  7. fix tests

    @stemangiola
    stemangiola committed Jun 25, 2022
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  8. fix tests

    @stemangiola
    stemangiola committed Jun 25, 2022
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  9. fix back deconvolution

    @stemangiola
    stemangiola committed Jun 25, 2022
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  10. Merge pull request #237 from stemangiola/SE_to_tidybulk_new_vocabulary 

    implement new vocabulary
    @stemangiola
    stemangiola authored Jun 25, 2022
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Commits on Jun 26, 2022

  1. merge dev 

    Merge branch 'dev' into polish_aggregation_tibble

Conflicts:
	R/methods_SE.R
	R/utilities.R
	tests/testthat/test-bulk_methods_SummarizedExperiment.R
    @stemangiola
    stemangiola committed Jun 26, 2022
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  2. fix aggregation

    @stemangiola
    stemangiola committed Jun 26, 2022
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  3. Merge branch 'dev' into deprecate_dot_contrasts

    @stemangiola
    stemangiola authored Jun 26, 2022
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  4. Merge pull request #239 from stemangiola/deprecate_dot_contrasts 

    deprecate .contrasts and update tests
    @stemangiola
    stemangiola authored Jun 26, 2022
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  5. Merge pull request #238 from stemangiola/allow-mapping-to-other-genomes 

    avoid human annotation
    @stemangiola
    stemangiola authored Jun 26, 2022
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  6. Merge pull request #236 from stemangiola/robustify_deconvolution_SE 

    allow other feature column for SE
    @stemangiola
    stemangiola authored Jun 26, 2022
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  7. deprecation untested

    @stemangiola
    stemangiola committed Jun 26, 2022
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  8. deprecation untested

    @stemangiola
    stemangiola committed Jun 26, 2022
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  9. Merge branch 'deprecate_log_transform_for_function' of github.com:ste… 

    …mangiola/tidybulk into deprecate_log_transform_for_function
    @stemangiola
    stemangiola committed Jun 26, 2022
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  10. fix CHECK

    @stemangiola
    stemangiola committed Jun 26, 2022
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  11. add docs

    @stemangiola
    stemangiola committed Jun 26, 2022
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  12. fix CHECKs

    @stemangiola
    stemangiola committed Jun 26, 2022
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  13. Merge pull request #235 from stemangiola/polish_aggregation_tibble 

    Polish aggregation tibble
    @stemangiola
    stemangiola authored Jun 26, 2022
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  14. Merge pull request #244 from stemangiola/parallel-cibersort 

    implementation parallel cibersort
    @stemangiola
    stemangiola authored Jun 26, 2022
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Commits on Jun 28, 2022

  1. add news and version UP

    @stemangiola
    stemangiola committed Jun 28, 2022
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  2. use |> for tests

    @stemangiola
    stemangiola committed Jun 28, 2022
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  3. make tests more detailed

    @stemangiola
    stemangiola committed Jun 28, 2022
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  4. deprecation untested

    @stemangiola
    stemangiola committed Jun 28, 2022
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  5. fix CHECKs

    @stemangiola
    stemangiola committed Jun 28, 2022
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  6. Merge branch 'deprecate_log_transform_for_function' of github.com:ste… 

    …mangiola/tidybulk into deprecate_log_transform_for_function
    @stemangiola
    stemangiola committed Jun 28, 2022
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  7. drop tsne test

    @stemangiola
    stemangiola committed Jun 28, 2022
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  8. deprecation untested

    @stemangiola
    stemangiola committed Jun 28, 2022
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  9. fix CHECKs

    @stemangiola
    stemangiola committed Jun 28, 2022
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  10. Merge branch 'deprecate_log_transform_for_function' of github.com:ste… 

    …mangiola/tidybulk into deprecate_log_transform_for_function
    @stemangiola
    stemangiola committed Jun 28, 2022
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  11. Merge pull request #241 from stemangiola/deprecate_log_transform_for_… 

    …function

deprecation untested
    @stemangiola
    stemangiola authored Jun 28, 2022
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