2022-Q1-Release plan

[syphax-bouazzouni]

This issue is a description of the main contributions and changes bring by the 2021 Release, it has for purpose to list and fellow the developments progression of the features through this cycle.

Timeline

• Started: February , 2022
• Ends: April , 2022

New features

• update ontology edit/new view ui ontoportal-lirmm/bioportal_web_ui#67
• Refactor/fix notification #257
• on submission delete add removing its directory and files ontoportal-lirmm/ontologies_linked_data#20
• re-enable reviews views in the UI ontoportal-lirmm/bioportal_web_ui#68 (not merged)

Content fixes

• CO pull location update each day #167
• 0ntologies diagnostics (January 2022) #192
• Add AgBioData group to some ontologies #249
• 0ntologies diagnostics (January 2022) - Ontologies with DIFF ERROR #213
• Parse MEAT-T and remove THVIANDE #209
• Issues when automatically pulling new ontologies  #176
• remove CROPUSAGE_FR #185
• Add AgBioData group to some ontologies #249
• Fix the previous submission of LPT so that it can be parsed for the DIFF #232
• can't pull EFO and SFWO #239
• pb loading thesaurus DATA4CPLUS #225
• Parse MEAT-T and remove THVIANDE #209
• EFO can't process because /srv/ontoportal/data/repository/EFO/39/efo.owl is not found #207
• DEMETER-AIM can't parse #211
• CO_336 can't parse #201
• SFWO: The latest submission is not ready and is ahead of the latest ready by 2 revisions #227

Bug fixes

• See the state of our tests #237
• Server down error (4store) ontoportal-lirmm/bioportal_web_ui#8
• "Something went wrong screen" after new submission #190
• Error on deleting an ontology that has provisionalClasses ncbo/ontologies_linked_data#127
• update multilingual classes prefLabel defaults ontoportal-lirmm/goo#6
• Search test done is inconsistent as it test deprecated or multilingual classes that are not indexed #223
• a bad url is given for aliased attributes in @context ontoportal-lirmm/goo#1

Devops

• Enhance deployment scripts #214
• Implement a development environment for each projects #144
• Deploy testportal #210
• deploy outlinewiki in jonquetlab #193
• Archive not used repos #161
• enable lemmatized annotator #242
• Re-deploy ncboproxy project  #206

Documentation

• AgroPortal documentation consolidation and new documentation #162

Linked pull requests (Our contributions to the ontoportal project)

• Delete provisionalClasses on ontology delete ncbo/ontologies_linked_data#128
• Fix get a submission metrics ncbo/ontologies_api#78
• Add option to disable invalidate cache for all if wanted ncbo/ontologies_api_ruby_client#9
• Diff process : fix zip/gzip and output folder bugs ncbo/ontologies_linked_data#131
• Update the regex of extracting the file name from a dowloaded response header ncbo/ontologies_linked_data#134
• Refactor: Queries module code refactor ncbo/goo#117
• Feature: Add portal languages preference  ncbo/goo#118
• Fix: remove submission directory and files on submission delete ncbo/ontologies_linked_data#136
• Add a script to remove a list of submission from an id to an other id ncbo/ncbo_cron#52
• Feature: use the resolved namespace instead of the default vocabulary in the @context ncbo/ontologies_linked_data#141

[syphax-bouazzouni]

To be continued in the next quarter

• Server down error (4store) ontoportal-lirmm/bioportal_web_ui#8
• update ontology edit/new view ui ontoportal-lirmm/bioportal_web_ui#67
• See the state of our tests #237
• Implement a development environment for each projects #144
• AgroPortal documentation consolidation and new documentation #162