4.5.1

Song Release Notes

• Release Version: 4.5.1
• Release Date: April 8, 2021

New Features and Changes

• #717 Kafka Message after Publish contains accurate publish date properties.

4.5.0

Song Release Notes

• Release Version: 4.5.0
• Release Date: March 23, 2021

New Features and Changes

• Added support for the configurable Swagger API to to run behind a reverse proxy. This is to enable the Song API for use behind the DMS gateway provided in the Overture DMS platform bundle.

4.4.0

• Application Auth tie in with Ego
• Created and Updated dates with Analysis and Analysis Types
• State History and published/firstPublished dates for Analyses

4.2.2

Merge pull request #641 from overture-stack/rc/4.2.2

Release Candidate 4.2.2

4.0.0

Summary

Breaking Changes

• changed the base schema for song (for more details on the exact changes, refer to the description in PR #573)
• renamed /upload endpoint to /submit
• changed study to studyId in payload
• removed info fields from displaying at each level when not being used in payload
• renamed sample to samples in payload
• renamed file to files in payload

Bug Fixes

• fixed export command on song-client to write to directory

Cleanup

• removed dcc-common and dcc-id dependencies

Automatic Schema Migrations

• gender values automatically migrated to Male, Female, Other

Docker Images

Song Client: docker pull overture/song-client:4.0.0
Song Server: docker pull overture/song-server:4.0.0

Distributions

song-server 4.0.0 distribution
song-client 4.0.0 distribution

Details

Full Changelog

Fixed bugs:

• BUG - client export not writing to directory #545

Closed issues:

• Change base schema of song #559
• Update Permissible values in Song to match Argo Clinical #557
• Remove dcc-common & dcc-id dependency #503

Merged pull requests:

• Release Candidate 4.0.0 #579 (rtisma)
• Fixed client sample output #578 (rtisma)
• Fix matched normal #577 (rtisma)
• base-schema-migration-fix #575 (rtisma)
• Remove dcc common and dcc id dependency#503 #574 (KevinFHartmann)
• Song 559 change base schema #573 (rtisma)
• Bug client export not writing to directory#545 #572 (KevinFHartmann)
• File study submit sample rename #570 (rtisma)
• Song 557 gender filetype #568 (rtisma)
• Mergeback 3.1.1 snapshot #567 (rtisma)

3.1.1

Summary

Bug Fixes

• song-client cannot be executed from the ./bin directory

Docker Images

Song Client: docker pull overture/song-client:3.1.1
Song Server: docker pull overture/song-server:3.1.1

Distributions

song-server 3.1.1 distribution
song-client 3.1.1 distribution

Details

Full Changelog

Fixed bugs:

• BUG - Update song-client docker to properly execute #556
• Fixed sing executable #563 (rtisma)

Merged pull requests:

• Bugfix: sing now computes it's parent directory correctly #558 (KevinFHartmann)

3.1.0

Summary

New Features

• Analysis analysisIds are now only randomly generated by song-server
• File objectIds are now only UUID5 hashed by song-server

Bug Fixes

• Payload validation failed during java-based validation instead of jsonSchema-based validation
• song-client search -a and update-file commands did not deserialized file objects properly
• registerAnalysis endpoint did not block from overwriting the analysisState validation
• createStudy endpoint now returns a simple json message
• updating a file triggered an automatic unpublishing of the associate analysis. The was not intended and was removed.

Docker Images

Song Client: docker pull overture/song-client:3.1.0
Song Server: docker pull overture/song-server:3.1.0

Distributions

song-server 3.1.0 distribution
song-client 3.1.0 distribution

Details

Full Changelog

Implemented enhancements:

• Force song to always generate objectIds #539
• Remove the option for user supplied analysisIds #494

Fixed bugs:

• Response code = 0 when creating a study properly #394
• Remove uneccessary non-json schema validation #543
• BUG - Submit payload deserialization issue #551
• BUG: song-client analysisSearch and fileUpdate not processing file entity properly #504
• BUG - registerAnalysis endpoint does not block analysisState field #481
• BUG - remove auto unpublish step when updating file content #547
• BUG - CreateStudy endpoint returns 200 but says error in swagger #508

Closed issues:

• Create Spring Properties and Configuration #493
• Add functionality to correct an analysis, as well as Tests #126

Merged pull requests:

• Enhancement: Remove auto unpublish #554 (KevinFHartmann)
• Enhancement: CreateStudy endpoint now returns a JSON object to keep S… #553 (KevinFHartmann)
• Added tests #552 (KevinFHartmann)
• fixed broken develop #550 (rtisma)
• song-481-register-analysis-state-bug #549 (rtisma)
• updated federatedIdService to locally generate objectids #548 (rtisma)

3.0.1

Summary

Infra

• added bootstrap.properties to classpath for Dockerfile command
• added distribution to artifactory in Jenkinsfile

Docker Images

Song Client: docker pull overture/song-client:3.0.1
Song Server: docker pull overture/song-server:3.0.1

Distributions

song-server 3.0.1 distribution
song-client 3.0.1 distribution

Details

Full Changelog

Merged pull requests:

• Release 3.0.1 #540 (rtisma)
• fixed-docker-command #538 (rtisma)
• Define release process for artifactory roadmap#148 #537 (KevinFHartmann)
• Trying syntax again #527 (KevinFHartmann)
• Define release process for cleints to oicr artifactory roadmap 148 #526 (KevinFHartmann)

3.0.0

Summary

Breaking Changes

• removed analysisId field from submission payload for the Submit endpoint in song-server. They are now randomly generated
• removed includeAnalysisId request parameter from Export endpoint in song-server
• removed -i, --include-analysis-id from export command in song-client
• removed includeAnalysisId method argument from export SDK method

Bug Fixes

• Fixed song-client updateFile and search -a file deserialization issues

New Features

• Added customizable federated ID service configuration

Infra

• Improved docker infrastructure to not use docker host network and use images from Dockerhub

Docker Images

Song Client: docker pull overture/song-client:3.0.0
Song Server: docker pull overture/song-server:3.0.0

Details

Full Changelog

Closed issues:

• Update docker infra #499
• Refactor LocalIdService #489
• Release Dynamic Song + client #485
• Id Server Integration Specs #483
• Implement configurable ID generation #471

Merged pull requests:

• Release Candidate version 3.0.0 #2 #536 (rtisma)
• Release Candidate 2.3.0 #534 (rtisma)
• Song 494 remove analysis ids #533 (rtisma)
• Song 504 client file bug #519 (rtisma)
• Song 499 improve docker infra #510 (rtisma)
• Song 492 federated id service #507 (rtisma)
• Feature/170 dockerized psql exec #501 (Magnitus-)
• Song 489 localidservice #500 (rtisma)
• Merge Back - Master @ 2.2.0 #488 (rtisma)

2.2.0

Summary

Bug Fixes

• Manifest null error

New Features

• vault support for song-server

Cosmetic

• updated copyright headers
• updated out of date swagger docs

Docker Images

Song Client: docker pull overture/song-client:2.2.0
Song Server: docker pull overture/song-server:2.2.0

Details

Full Changelog

Fixed bugs:

• BUG - Manifest command not working #472

Closed issues:

• Update Copyright Information #470
• Update Swagger doc descriptions #467
• Technical Architecture SONG #465

Merged pull requests:

• Song client docker #486 (rtisma)
• Adds vault support to song #484 (andricDu)
• Update swagger annotations #479 (rtisma)
• song-472 Fixed manifest issue #478 (rtisma)
• Merge Back - Master @ 2.1.0 #477 (rtisma)
• Song 470 update copyright #476 (rtisma)