Release 5.12.0-SNAPSHOT

Docker Images

• Score Client: docker pull ghcr.io/overture-stack/score:5.12.0-SNAPSHOT
• Score Server: docker pull ghcr.io/overture-stack/score-server:5.12.0-SNAPSHOT

What's Changed

• Fix deprecated maven repo by @leoraba in #391
• code format by @leoraba in #392
• Updated Slack link by @MitchellShiell in #372
• Update Jenkinsfile by @yalturmes in #397
• Fix related to eliminating the dcc Dependencies and unsed tests from the code by @Azher2Ali in #402
• Commiting fix related to Download of an ObjectId with/without .meta files by @Azher2Ali in #400
• S3 Service using API instead of .meta file by @Azher2Ali in #406
• Refactor S3 Bucket Name Retrieval Method by @Azher2Ali in #408
• Improve String Handling for Empty and Whitespace Parameters in Key and Bucket Methods by @Azher2Ali in #409
• Generate Logical Parts for object downloads when no .meta file is available by @Azher2Ali in #413
• Retrieve MD5 from object metadata by @joneubank in #414
• Keycloak permission manager by @leoraba in #387
• Renamed the constant ICGCFS to SCOREFS by @Azher2Ali in #425
• change URI scheme from icgc:// to score:// by @Azher2Ali in #426
• Remove wiki reference comment in DownloadManifest.java by @Azher2Ali in #427
• Remove unused scripts and static resources from score by @Azher2Ali in #433
• Update token header key from ICGC to SCORe by @Azher2Ali in #436
• Update READMEs to replace ICGC with SCORe by @Azher2Ali in #448
• Renaming the icgc references to SCORe by @Azher2Ali in #452
• Rephrasing the error handling messages by @Azher2Ali in #456
• Renaming the icgc reference to SCORe by @Azher2Ali in #455
• Deleting the settings folder belonging to specific IDEs by @Azher2Ali in #450
• Removing out dated tests which are no longer in service by @Azher2Ali in #451
• Updating the icgc buckets to overture.example.score by @Azher2Ali in #457
• Deleting unused templated which are related to kf by @Azher2Ali in #465
• Rename Default Buckets in Docker-Compose and Update References in SCORe by @Azher2Ali in #471
• Consolidate Manifest Handling by Removing KF-Specific Implementation by @Azher2Ali in #470
• Eliminating Error messaging referencing ICGC by @Azher2Ali in #454
• Removing ICGC support contact info currently which are inside the SCO… by @Azher2Ali in #453
• Remove Hardcoded Profiles and Default URLs from SCORe Client by @Azher2Ali in #469
• Eliminating kf profile from the codebase by @Azher2Ali in #476
• Remove @Profile Annotations from DownloadController and UploadController by @Azher2Ali in #477
• Remove Hardcoded URL in Benchmark Profile by @Azher2Ali in #478
• Eliminating aws and collaboratory profile and configuring s3 profile in application.yml and documentation. by @Azher2Ali in #479
• Rename COLLABORATORY Strorage Profile to S3 in SCORe by @Azher2Ali in #480
• Merge from main to develop by @leoraba in #483

New Contributors

• @Azher2Ali made their first contribution in #402

Full Changelog: 5.10.0...5.12.0-SNAPSHOT

Release 5.11.0

Docker Images

• Score Client: docker pull ghcr.io/overture-stack/score:5.11.0
• Score Server: docker pull ghcr.io/overture-stack/score-server:5.11.0

What's Changed

• Rc/5.11.0 by @leoraba in #418

Full Changelog: 5.10.1...5.11.0

5.10.0

What's Changed

• Mb/5.4.0 snapshot by @yalturmes in #297
• azure setup documentation by @andricDu in #299
• md5 conversion from base64 to hex for azure blob storage by @andricDu in #301
• make upload state parent directory configurable by @jaserud in #303
• Rc/5.4.0 by @jaserud in #305
• increases hardcoded azure block size by @andricDu in #306
• Rc/5.4.0 by @andricDu in #307
• 5.5.0 as 5.4.0 already exist by @andricDu in #309
• Mb/5.6.0 snapshot by @andricDu in #310
• Jenkins dind fix by @yalturmes in #311
• updated azure storage version by @andricDu in #313
• sets block size on blob client. by @andricDu in #315
• Rc/5.6.0 by @andricDu in #316
• Auth to metadata by @jaserud in #314
• Mb/5.7.0 snapshot by @andricDu in #319
• configurable azure blocksize plus docs by @andricDu in #321
• Rc/5.7.0 by @andricDu in #322
• use legacy entities endpoint to get objectids by @jaserud in #318
• add uploadStateDir to client template app props by @jaserud in #324
• Mb/5.8.0 snapshot by @andricDu in #323
• swagger docs and health endpoint by @andricDu in #325
• Release Candidate 5.8.0 by @jaserud in #326
• add missing brace by @jaserud in #328
• Song and Score URL config for ICGC Azure Profile by @joneubank in #329
• Release Candidate 5.8.1 by @joneubank in #331
• Score-client JDK update from 11 to 17 by @dahiyaAD in #353
• Jenkins timeout change by @dahiyaAD in #354
• add Maven repositories by @leoraba in #355
• Revert "Jenkins timeout change" by @dahiyaAD in #356
• View showing header only - #229 by @dahiyaAD in #358
• Rc/5.8.4 by @dahiyaAD in #360
• Mergeback/5.8.5 by @dahiyaAD in #361
• Updates to address #229 - #346 by @dahiyaAD in #362
• Allow --reference-file to use compressed BGZIP files#347 by @dahiyaAD in #363
• rc/5.9.0 by @dahiyaAD in #365
• Mergeback/5.9.1 snapshot by @dahiyaAD in #366
• Readme updated by @MitchellShiell in #344
• CORS configurations for score server allowing multiple origins by @dahiyaAD in #369
• Organizing score-server application.yml by @dahiyaAD in #370
• Fix docker multi arch by @leoraba in #374
• using JDK image as builder by @leoraba in #375
• update docker dind by @leoraba in #376
• fix docker dind TLS by @leoraba in #379
• increase Jenkins timeout by @leoraba in #380
• Fix/jenkins extend timeout by @leoraba in #381
• update DeployWithHelm job name in Jenkinsfile by @leoraba in #383
• fix for issue #385 by @UmmulkiramR in #386
• Auto sync storage profiles #378 by @UmmulkiramR in #382

New Contributors

• @dahiyaAD made their first contribution in #353

Full Changelog: 5.3.0...5.10.0

Merge pull request #296 from overture-stack/rc/5.3.0

Score Release Notes

• Release Version: 5.3.0
• Release Date: March 18, 2021

Bug Fixes Since Last Release

• Fixed Docker build/tag instructions in Jenkins file to use correct version.

3.0.1

Summary

Bug Fixes

• null pointer exception when using the score-client to download by analysisId

Docker Images

Score Client: docker pull overture/score:3.0.1
Score Server: docker pull overture/score-server:3.0.1

Distributions

score-server 3.0.1 distribution
score-client 3.0.1 distribution

Details

Full Changelog

3.0.0

Summary

Breaking changes

• default storage and Spring Boot profile is default

Bug Fixes

• We default to using the S3 configuration unless we're using the 'azure' profile, rather than just crashing when the info command is run for things like 'oicr', etc.

Misc

• ./score-client info command now reports the metadataUrl and storageUrl

Docker Images

Score Client: docker pull overture/score:3.0.0
Score Server: docker pull overture/score-server:3.0.0

Distributions

score-server 3.0.0 distribution
score-client 3.0.0 distribution

Details

Full Changelog

2.2.1

Docker Images

Score Client: docker pull overture/score:2.2.1
Score Server: docker pull overture/score-server:2.2.1

Distributions

score-server 2.2.1 distribution
score-client 2.2.1 distribution

Details

Full Changelog

2.2.0

Docker Images

Score Client: docker pull overture/score:2.2.0
Score Server: docker pull overture/score-server:2.2.0

Distributions

score-server 2.2.0 distribution
score-client 2.2.0 distribution

Details

Full Changelog

1.6.1

Bug Fixes

• Fixed deadlock issue with song (#139)

Downloads

Score Server 1.6.1

Score Client 1.6.1

1.6.0

Bug Fixes

• Fixed View command errors on score-client with aligned and unaligned bams (#137)

New Features

• Added guard on score-server, that ensures only PUBLISHED objects can be downloaded (#129)

Downloads

Score Server 1.6.0

Score Client 1.6.0